Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g2039 ATGGAGGGTCATCATCTCCAACATCATCACCACCATCATCAGCGGCAACATCATCATCAACAACAACAGCAGCATCAACACCCTCATAACATGACAACTAGTGTTAACGTGGATGTGACGGATAGGTTCCCCCAATGGAGCCTTCAAGAGACAAAAGAGTTTCTCGTGATCCGTGCAGAGTTGGATCAGACTTTCATGGAGACAAAGAGGAACAAGCAACTTTGGGAAGTCATCTCCAACAAGATGAAGGAAAAGGGTTACCATAGAAGTGCAGAGCAGTGCAAGTGCAAGTGGAAAAACCTCGTTACCCGCTATAAGGGATGTGAAACGATGGAGCCAGAGGCTATGAGGCAGCAATTTCCATTTTACAATGAGCTTCAAGCGATTTTCACTTCAAGGATGCAGAGAATGCTGTGGGCTGAAGCAGAAGGAGGGTCAAAGAAAAAAGGGGTGCAGCTATCTTCTGAAGAAGAAGATGAAGGCAATGAAGAGAGTGAGGGGGATCACAAGGGTAGTAGCAGCAGGAAGAAGAAAAAAGGTAAGATGGTTGGTGGAGGAGGTAGTGGTAGTGGGAATAATAGCGGTTTGAATAGTTTGAAGGAGATTCTTGAGGAGTTCATGAGGCAACAAATGCAAATGGAAGCACAGTGGATGGAAGCATTTGAGGCAAGGGAGAATGAGAGGAGGTTGAAGGAGATGGAGTGGAGGCAAACCATGGAAGCATTGGAGAAAGAGAGGATAATGATGGACCAAAGATGGAGAGAGAGGGAAGAACAAAGAAGGATTAGAGAGGAAGTTAGGGCTGACAAGAGAGATGCTCTTATCACAACTCTGCTAAATAAGCTAAGAAGAGAAGAGATGTAG 864 0.4525 MEGHHLQHHHHHHQRQHHHQQQQQHQHPHNMTTSVNVDVTDRFPQWSLQETKEFLVIRAELDQTFMETKRNKQLWEVISNKMKEKGYHRSAEQCKCKWKNLVTRYKGCETMEPEAMRQQFPFYNELQAIFTSRMQRMLWAEAEGGSKKKGVQLSSEEEDEGNEESEGDHKGSSSRKKKKGKMVGGGGSGSGNNSGLNSLKEILEEFMRQQMQMEAQWMEAFEARENERRLKEMEWRQTMEALEKERIMMDQRWREREEQRRIREEVRADKRDALITTLLNKLRREEM* 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g2039 287 MobiDBLite consensus disorder prediction 1 24 - -
Apr4g2039 287 Gene3D - 46 107 - -
Apr4g2039 287 Coils Coil 196 216 - -
Apr4g2039 287 MobiDBLite consensus disorder prediction 145 196 - -
Apr4g2039 287 CDD GT1 44 109 - -
Apr4g2039 287 SMART sant 42 104 IPR001005 -
Apr4g2039 287 PANTHER - 1 285 - -
Apr4g2039 287 ProSiteProfiles Myb-like domain profile. 46 102 IPR001005 -
Apr4g2039 287 PANTHER TRANSCRIPTION FACTOR MYB FAMILY-RELATED 1 285 - -
Apr4g2039 287 MobiDBLite consensus disorder prediction 1 29 - -
Apr4g2039 287 Pfam Myb/SANT-like DNA-binding domain 45 129 IPR044822 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g2039 Apr-Chr4 29215565 29217257 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g2039 41 285 Trihelix Transcription Factor Family AT5G01380 54.307 7.92e-76 232
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Apr4g2039 Myb_DNA-bind_4 2.5e-19 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g2039 - - gmx:100794230 392.889
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr4g2039 4 29215565 29217257 Apr4g2039 4 29215565 29217257 ECH