Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g2038 ATGGGCAATTGCTGCAGATCTCCGGCCGCCGTCGCCCGCGAGGACGTCAAATCCACCTACTCCAACAACGATCACGCAAAGCGCGCCGCCGACACCGCCGGCGGCAAACACAAAGCTCCGATCACGGTGCTCGCCGGCGTGCCCAAAGAGAACATTGAAGACCGCTACCTCGTCGACCGTGAACTCGGTCGTGGAGAGTTCGGCGTCACTTATCTCTGCATAGACCGCGACACACGAGAGCTTTTGGCCTGCAAGAGCATCTCCAAACGGAAGCTCAGGACCGCCGTCGACGTCGAGGATGTGCGCCGCGAAGTTGCTATCATGCGCCACCTTCCGAAGAGCCCTAGCATCGTGTCGTTGAGGGAAGCGTGCGAAGACGACAATGCCGTTCACCTCGTCATGGAGCTCTGTGAGGGCGGTGAGCTCTTCGACCGGATCGTCGCGCGTGGACACTACACGGAGCGCGCCGCGGCTGCAGTTACGCGAACCATCGTCGAGGTCGTGCAGCTCTGCCACAAGCACGGTGTTATTCACCGTGACCTTAAGCCGGAGAATTTCTTGTTCGCTAACAAGAAGGAGAATTCGCCTCTTAAGGCTATTGATTTTGGACTCTCCATATTTTTCAAGCCAGGTGAGAGGTTCTCAGAAATTGTTGGAAGCCCATATTATATGGCTCCGGAGGTGCTCAAGCGGAATTACGGACCAGAAATAGATATATGGAGTGCAGGAGTAATTCTCTATATCTTATTGTGTGGCGTTCCCCCTTTTTGGGCTGAATCTGAGCAAGGAGTTGCACAGGCCATTCTTCGAGGGCTTATAGATTTCAAACGGGAACCTTGGCCCAGTATATCTGAAAGTGCTAAAAGTCTTGTTAGGCAAATGTTAGAACCAGACCCTAAGCTTCGGTTAACTGCCAAACAAGTTCTTGAGCATCCCTGGCTTCAAAATGCTAAGAAGGCTCCTAATGTTCCTCTTGGAGATGTTGTCAAGTCAAGGCTTAAGCAATTTTCAATGATGAACAGATTCAAAAGAAAAGCACTGAGGGTTATTGCAGATTTCTTGTCCAATGAAGAAGTTGAAGACATCAAAGATATGTTCAAGAAGATGGATATTGATAATGATGGTATTGTTTCCATTGAAGAACTAAAAGCTGGATTTCGAAACTTTGGTTCCCAACTTGCTGAGTCTGAAGTTCAGATGCTTATTGAAGCTGTAGACAACAATGGTAAGGGAACACTAGACTACGGAGAATTTGTTGCTGTTTCCCTTCATTTAAAAAGGATGGCTAATGATGAGCATCTTCGCAAGGCCTTTTCCTATTTTGACAAGGATGGGAATGGATATATTGAACCAGATGAGCTACGGAATGCCTTGATGGAAGATGGAACAGATGACTGTACAGATGTGGCAAATGATATTTTCCAAGAAGTAGACACGGACAAGGATGGACGTATCAGCTATGATGAATTTGTTGCTATGATGAAAACTGGAACAGATTGGAGAAAAGCTTCTAGGCATTACTCACGTGGGAGATTCAATAGCTTGAGCTTAAAGTTGATGAAAGACGGTTCTTTAAACTTAGGAAATGAGTAG 1593 0.4752 MGNCCRSPAAVAREDVKSTYSNNDHAKRAADTAGGKHKAPITVLAGVPKENIEDRYLVDRELGRGEFGVTYLCIDRDTRELLACKSISKRKLRTAVDVEDVRREVAIMRHLPKSPSIVSLREACEDDNAVHLVMELCEGGELFDRIVARGHYTERAAAAVTRTIVEVVQLCHKHGVIHRDLKPENFLFANKKENSPLKAIDFGLSIFFKPGERFSEIVGSPYYMAPEVLKRNYGPEIDIWSAGVILYILLCGVPPFWAESEQGVAQAILRGLIDFKREPWPSISESAKSLVRQMLEPDPKLRLTAKQVLEHPWLQNAKKAPNVPLGDVVKSRLKQFSMMNRFKRKALRVIADFLSNEEVEDIKDMFKKMDIDNDGIVSIEELKAGFRNFGSQLAESEVQMLIEAVDNNGKGTLDYGEFVAVSLHLKRMANDEHLRKAFSYFDKDGNGYIEPDELRNALMEDGTDDCTDVANDIFQEVDTDKDGRISYDEFVAMMKTGTDWRKASRHYSRGRFNSLSLKLMKDGSLNLGNE* 531
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g2038 530 SUPERFAMILY Protein kinase-like (PK-like) 47 339 IPR011009 -
Apr4g2038 530 SUPERFAMILY EF-hand 343 521 IPR011992 -
Apr4g2038 530 ProSiteProfiles EF-hand calcium-binding domain profile. 357 392 IPR002048 GO:0005509
Apr4g2038 530 ProSitePatterns EF-hand calcium-binding domain. 478 490 IPR018247 -
Apr4g2038 530 ProSitePatterns EF-hand calcium-binding domain. 370 382 IPR018247 -
Apr4g2038 530 SMART efh_1 469 497 IPR002048 GO:0005509
Apr4g2038 530 SMART efh_1 361 389 IPR002048 GO:0005509
Apr4g2038 530 SMART efh_1 397 425 IPR002048 GO:0005509
Apr4g2038 530 SMART efh_1 433 461 IPR002048 GO:0005509
Apr4g2038 530 Gene3D - 323 498 - -
Apr4g2038 530 PANTHER SERINE/THREONINE-PROTEIN KINASE 6 511 - -
Apr4g2038 530 ProSitePatterns EF-hand calcium-binding domain. 442 454 IPR018247 -
Apr4g2038 530 ProSiteProfiles EF-hand calcium-binding domain profile. 429 464 IPR002048 GO:0005509
Apr4g2038 530 ProSiteProfiles EF-hand calcium-binding domain profile. 465 500 IPR002048 GO:0005509
Apr4g2038 530 CDD EFh 433 495 IPR002048 GO:0005509
Apr4g2038 530 CDD STKc_CAMK 55 313 - -
Apr4g2038 530 ProSitePatterns Protein kinases ATP-binding region signature. 62 85 IPR017441 GO:0005524
Apr4g2038 530 ProSitePatterns Serine/Threonine protein kinases active-site signature. 176 188 IPR008271 GO:0004672|GO:0006468
Apr4g2038 530 PANTHER CALCIUM-DEPENDENT PROTEIN KINASE 13 6 511 - -
Apr4g2038 530 Gene3D Phosphorylase Kinase; domain 1 57 141 - -
Apr4g2038 530 Pfam EF-hand domain pair 360 420 IPR002048 GO:0005509
Apr4g2038 530 Pfam EF-hand domain pair 432 495 IPR002048 GO:0005509
Apr4g2038 530 ProSiteProfiles Protein kinase domain profile. 56 314 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr4g2038 530 ProSiteProfiles EF-hand calcium-binding domain profile. 393 428 IPR002048 GO:0005509
Apr4g2038 530 SMART serkin_6 56 314 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr4g2038 530 Gene3D Transferase(Phosphotransferase) domain 1 142 322 - -
Apr4g2038 530 Pfam Protein kinase domain 58 314 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g2038 Apr-Chr4 29172340 29181060 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g2038 1 415 EF-hand Containing Proteins AT3G51850 87.711 0.0 756
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Apr4g2038 Pkinase 4e-74 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g2038 K13412 - gmx:100783922 1007.67
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr4g2038 4 29172340 29181060 Apr4g2038 4 29172340 29181060 ECH