Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g2035 ATGGAAACGGTTTTTAGCCCCCGCACTGTTGAAGAGATCTTCAAGGACTATAGCGCCCGAAGAACCGCTGTTATTCGTGCTCTTACTCAAGACGTCGATGAATTTTACGGCCTCTGTGATCCAGATAAGGAAAACTTGTGTCTCTATGGACTTCCGAATGAAAACTGGGAAGTAACTCTGCCGGTGGATGAAGTTCCGCCGGAGCTCCCCGAGCCGGCACTTGGAATCAATTTTGCTAGAGATGGCATGAATCGAAGGGATTGGCTTTCGTTGGTTGCTGTGCATAGTGATTCATGGTTGCTTTCTGTGGCCTTTTACCTTGGAGCTCGCCTTAACCGCAATGAGAGCATTTTTGCTCAGCATCTGCTGCAACTTGGTATATGGTTCCATCTATTGATGGTTCCCCTGATTCTTCATGGCAGGAAACGTTTGTTTAGTTTGGTCAATGATCTTCCCACCATTTTTGAAGTTGTGACTGATAGAAAACCAATTAAGGACAAGCCCGCCGTGGATAGTGGAAGCAAATCCCGAGGAAGCACCAAGAGATCTAGCGATGGGCAAGTTAAAAGCAACCCGAAGTTTGCAGATGAGGGTTATGAGGATGATGATGATGAGCATAGTGAAACACTTTGTGGTTGCTGCGGTGGAAATTACAACGCGGATGAGTTTTGGATTGGCTGTGATGTATGTGAGAGGTGGTTCCATGGGAAATGTGTTAAGATTACCCCTGCAAAGGCTGAGGGCATAAAGCAATATAAATGTCCATCATGCAGCATGAAGCGGAACAAGACTTAG 795 0.4616 METVFSPRTVEEIFKDYSARRTAVIRALTQDVDEFYGLCDPDKENLCLYGLPNENWEVTLPVDEVPPELPEPALGINFARDGMNRRDWLSLVAVHSDSWLLSVAFYLGARLNRNESIFAQHLLQLGIWFHLLMVPLILHGRKRLFSLVNDLPTIFEVVTDRKPIKDKPAVDSGSKSRGSTKRSSDGQVKSNPKFADEGYEDDDDEHSETLCGCCGGNYNADEFWIGCDVCERWFHGKCVKITPAKAEGIKQYKCPSCSMKRNKT* 265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g2035 264 PANTHER ZINC FINGER, FYVE/PHD-TYPE, ZINC FINGER, RING/FYVE/PHD-TYPE, ALFIN-RELATED 6 116 - -
Apr4g2035 264 PANTHER ZINC FINGER, FYVE/PHD-TYPE, ZINC FINGER, RING/FYVE/PHD-TYPE, ALFIN-RELATED 139 263 - -
Apr4g2035 264 CDD PHD_AL_plant 210 260 IPR044104 -
Apr4g2035 264 SUPERFAMILY FYVE/PHD zinc finger 199 262 IPR011011 -
Apr4g2035 264 ProSiteProfiles Zinc finger PHD-type profile. 208 260 IPR019787 -
Apr4g2035 264 ProSitePatterns Zinc finger PHD-type signature. 211 257 IPR019786 -
Apr4g2035 264 MobiDBLite consensus disorder prediction 173 190 - -
Apr4g2035 264 Pfam PHD-finger 211 259 IPR019787 -
Apr4g2035 264 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 201 258 IPR013083 -
Apr4g2035 264 Pfam Alfin 9 115 IPR021998 GO:0006355|GO:0042393
Apr4g2035 264 PANTHER CPG BINDING PROTEIN 139 263 IPR045104 GO:0006355|GO:0042393
Apr4g2035 264 PANTHER CPG BINDING PROTEIN 6 116 IPR045104 GO:0006355|GO:0042393
Apr4g2035 264 SMART PHD_3 210 258 IPR001965 -
Apr4g2035 264 MobiDBLite consensus disorder prediction 165 202 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g2035 Apr-Chr4 29136906 29140189 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g2035 6 263 Alfin-like Transcription Factor Family AT5G05610 68.340 3.84e-110 316
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Alfin-like Apr4g2035 Alfin 5.6e-57 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g2035 - - aprc:113860961 532.717
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr4g2035 4 29136906 29140189 Apr4g2035 4 29136906 29140189 ECH
Apr4g2035 4 29136906 29140189 Apr10g0737 10 18543526 18546419 PCT