Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g2034 ATGGGTGTGGACTACTACAAGATTCTTCAGGTTGATAGAAGCGCCAAAGATGATGATCTCAAGAAAGCATACCGAAAGCTTGCCATGAAGTGGCATCCTGATAAGAACCCTAACAACAAAAAAGAGGCTGAAGCTAAATTCAAGCAAATCTCCGAAGCCTATGATGTTTTGAGTGATCCACAGAAGCGAGCAGTGTATGATCAGTATGGTGAGGAAGGGTTGAAGGGGGTGCCACCCCCAGGTGCAGGTGGTTTTTCCAGCGGCAGTGACGGCGGGCCGACAACATTCCGGTTCAACCCCAGAAGTGCAGATGATATATTTTCAGAGTTTTTTGGGTTTTCCAGTCCCTTTGGTGGAATGGGGGACATGGGTGGGCGTGCTGGTGGCTCTGGATTTTCAAGGGGTGGCATGTTTGGTGAAGATATTTTTGCTCAATTTCGGAGTGGAGCTGGAGAGGGCTCTGGCCATATGCCAAGGAAAGGTGCAGCCATTGAGAAAACATTGCATTGTAGTTTGGAGGATCTGTATAAAGGGACTACCAAGAAAATGAAGATTTCGAGGGATGTTTGTGATTCCAGTGGGAGACCGACCACAGTAGAGGAAATCCTTACAATTGAGATCAAGCCAGGTTGGAAGAAAGGAACAAAAATAACTTTTCCAGAAAAGGGAAATGAACAAAGAGGAGTTATACCTGCAGACCTTGTCTTTATAATTGATGAGAAGCCTCATAGCCTCTTCAAGAGGGATGGCAATGACCTTGTTGTCACCCAGAAGATATCTCTGGTAGAAGCCTTGACGGGTTACACAGTGCAGCTGACAACCCTTGACGGACGCAATCTTACAATCCCCGTTAACTCCATTATTAGTCCAACTTATGAAGAAGTTGTCAAGGGCGAGGGTATGCCAATTCCCAAAGAACCATCCAAGAAAGGAAACTTGAGAATCAAGTTCAATATCAAGTTTCCCTCCAGGCTTACATCAGAACAAAAAAGTGGCATTAAGCGGTTATTGACGTCTCCATAA 1023 0.4536 MGVDYYKILQVDRSAKDDDLKKAYRKLAMKWHPDKNPNNKKEAEAKFKQISEAYDVLSDPQKRAVYDQYGEEGLKGVPPPGAGGFSSGSDGGPTTFRFNPRSADDIFSEFFGFSSPFGGMGDMGGRAGGSGFSRGGMFGEDIFAQFRSGAGEGSGHMPRKGAAIEKTLHCSLEDLYKGTTKKMKISRDVCDSSGRPTTVEEILTIEIKPGWKKGTKITFPEKGNEQRGVIPADLVFIIDEKPHSLFKRDGNDLVVTQKISLVEALTGYTVQLTTLDGRNLTIPVNSIISPTYEEVVKGEGMPIPKEPSKKGNLRIKFNIKFPSRLTSEQKSGIKRLLTSP* 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g2034 340 PANTHER DNAJ HEAT SHOCK FAMILY PROTEIN 1 338 - -
Apr4g2034 340 PRINTS DnaJ domain signature 6 24 IPR001623 -
Apr4g2034 340 PRINTS DnaJ domain signature 24 39 IPR001623 -
Apr4g2034 340 PRINTS DnaJ domain signature 42 62 IPR001623 -
Apr4g2034 340 PRINTS DnaJ domain signature 62 81 IPR001623 -
Apr4g2034 340 Gene3D - 243 323 - -
Apr4g2034 340 CDD DnaJ 4 59 IPR001623 -
Apr4g2034 340 SUPERFAMILY HSP40/DnaJ peptide-binding domain 246 331 IPR008971 GO:0006457|GO:0051082
Apr4g2034 340 MobiDBLite consensus disorder prediction 72 96 - -
Apr4g2034 340 Pfam DnaJ domain 4 67 IPR001623 -
Apr4g2034 340 SUPERFAMILY Chaperone J-domain 3 119 IPR036869 -
Apr4g2034 340 PANTHER DNAJ HOMOLOG SUBFAMILY C MEMBER 1 338 - -
Apr4g2034 340 Gene3D - 162 241 - -
Apr4g2034 340 ProSitePatterns Nt-dnaJ domain signature. 47 66 IPR018253 -
Apr4g2034 340 SUPERFAMILY HSP40/DnaJ peptide-binding domain 165 243 IPR008971 GO:0006457|GO:0051082
Apr4g2034 340 CDD DnaJ_C 164 325 - -
Apr4g2034 340 Pfam DnaJ C terminal domain 164 322 IPR002939 -
Apr4g2034 340 SMART dnaj_3 3 62 IPR001623 -
Apr4g2034 340 ProSiteProfiles dnaJ domain profile. 4 70 IPR001623 -
Apr4g2034 340 Gene3D DnaJ domain 3 122 IPR036869 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g2034 Apr-Chr4 29122686 29131280 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g2034 5 69 C2H2 Transcription Factor Family AT1G74250 37.681 1.13e-09 57.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g2034 K09510 - gmx:100818358 544.273
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr4g2034 4 29122686 29131280 Apr4g2034 4 29122686 29131280 ECH
Apr4g2034 4 29122686 29131280 Apr10g0736 10 18515760 18521468 PCT