Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g2033 ATGGCGGAGCCTAATTTCACCACCGTCACTCCTCCTCCTCTCCCGTCGGTGGAAAGCGCGCCGCCGCCGCCGAGTAGCTCCCAAACTCGGTTGGTATCACGTGAGCCCCAGCACGTGAGGATTACTAGGGACGATACCTGCTCCTGCTTCGCCGTTGTCTTCAGCTTCTGGTTTTTCGTGTCGGTGACTCTTATATTGGGGGTTTATGGGTCCCTGATCGTCGAGCTTGGTCCAGAAACTTCTATTGTTTTCCAACCTAGTCCCCTGTTTGTCCAATTTGTGAAGGTAGAAAATTTAGAGGCAAAGTCAAGCCCAGGACCTATTCTTTATGGTACATATGGATATCCACCCCTTGATGTTGTTACCACTTGGGGAGTGACTCGTAATGTATCTCTTCCCTCTGGCTCGCATAAGGAATGGAAATATTATCTGAACAAAGGGTCTGAAGTAAATATTTCGTATCACGTGAGCTCTACGAGCTCTTTTGTTTTCCTTATAATTGCAGATGGGTTGGACAGCCTCACTCAGTGGCTAGAGAACCCAACATATCCTAATATAACTCTGTCATGGAACATGATCCATGGAATTGGTATTATTTCACAGGAAATATTCTGGTCATCGAGCTATTATGTGGCAGTGGGTAATTTGGATGAGGAGGTGGAGGTGGAATTAAACCTCAGTGTAAAGGCCTTTTTGCATAATACAACGAACGCATACTACAAATGTTCTCTGACTAGTAGTCCATGCAGTTTGAATATTTTTTTTCCAGATGGAAATGCAGCTGTGCTAGTTTCTCCAGGTCCACAACAGGAGAACGCATCCAATGAGTGGTCTGTCAAAGTGTCCTATGGACCAAGATGGGTGACCTATATTTTTGGCATAGCTGGAATGACTTTGCTTATGTTATGGGCCTTCAACCACTTGAACACGCTGCAGTGTGCCCAAGAAGATAGAGTGGGAGTTACAATTGAGGAAATAGCACCTCAAAGAGCCCCTTTGCTTTCTCGTAAAGATGATGATCTCTCAAGTTGGGGTTCATCATATGATTCATTGCCACAGGATGAGGAGGATCTTGAATTTCTCCCAGGAGGTTCCATTGATGGGAAGTTTTCAGGTAATGGTGAAACCAGTAATAATACCCGGCGTCTTTGTGGAATTTGCTTTGATGCTCCAAGGGACTGCTTCTTCCTTCCATGTGGGCACTGTGTCGCTTGTTTTGCATGTGGAACTAGGATAGTCGAGGCAGCTGGTACCTGCCCTGTTTGTCGAAGGAAAATGAAGAAGGTGAGAATGATTTTTACTGTCTGA 1308 0.4549 MAEPNFTTVTPPPLPSVESAPPPPSSSQTRLVSREPQHVRITRDDTCSCFAVVFSFWFFVSVTLILGVYGSLIVELGPETSIVFQPSPLFVQFVKVENLEAKSSPGPILYGTYGYPPLDVVTTWGVTRNVSLPSGSHKEWKYYLNKGSEVNISYHVSSTSSFVFLIIADGLDSLTQWLENPTYPNITLSWNMIHGIGIISQEIFWSSSYYVAVGNLDEEVEVELNLSVKAFLHNTTNAYYKCSLTSSPCSLNIFFPDGNAAVLVSPGPQQENASNEWSVKVSYGPRWVTYIFGIAGMTLLMLWAFNHLNTLQCAQEDRVGVTIEEIAPQRAPLLSRKDDDLSSWGSSYDSLPQDEEDLEFLPGGSIDGKFSGNGETSNNTRRLCGICFDAPRDCFFLPCGHCVACFACGTRIVEAAGTCPVCRRKMKKVRMIFTV* 436
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g2033 435 MobiDBLite consensus disorder prediction 1 35 - -
Apr4g2033 435 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 372 434 IPR013083 -
Apr4g2033 435 PANTHER E3 UBIQUITIN-PROTEIN LIGASE APD1-RELATED 31 435 - -
Apr4g2033 435 Pfam Domain of unknown function (DUF4793) 199 303 IPR032010 -
Apr4g2033 435 Pfam Zinc finger, C3HC4 type (RING finger) 381 429 - -
Apr4g2033 435 PANTHER OS05G0521000 PROTEIN 31 435 IPR044586 GO:0004842
Apr4g2033 435 Pfam Domain of unknown function (DUF4792) 106 174 IPR032008 -
Apr4g2033 435 MobiDBLite consensus disorder prediction 337 356 - -
Apr4g2033 435 ProSiteProfiles Zinc finger RING-type profile. 384 423 IPR001841 -
Apr4g2033 435 MobiDBLite consensus disorder prediction 8 22 - -
Apr4g2033 435 SUPERFAMILY RING/U-box 383 429 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g2033 357 432 C3H Transcription Factor Family AT3G06140 30.263 4.65e-06 46.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g2033 - - gmx:100791057 638.262
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr4g2033 4 29108739 29120741 Apr4g2033 4 29108739 29120741 ECH