Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g2022 ATGGGTTCTCACCAGCAAGAGCCATGGCAACTAGAGAATGGGAACTTGAAGGGGTTGAGCAAGGAGATGAGGCATGGCCGCACCGCACACAACAAGTCTTCTTCTTCCTTGCGCAAGAAATCTGATCTCACTCTTGTATCGAAGATTCGATGTGGATTACTTAGAAACTTCCTTACTAACTGCCAAGAGGTTATTCTTGGCACCAAGCTTTCTATTCTCTTCCCTGCCATTCCGGTTGCTATCATTGCCCAGTGCTATGGCCTTGGAAGACCGTGGGTTTTTGTACTGAGCTTACTTGGGCTTACTCCACTTGCTGAACGTGTTAGCTTCCTCACAGAACAAGTTGCCTACTACACTGGTCCTACAGTTGGAGGACTTCTAAATGCGACATGTGGGAATGTTACTGAGCTCATAATAGCAATATTTGCCCTTAGCAGTAACAAAATTGCTGTGGTCAAGTATTCTCTCTTGGGTTCTGTACTCTCAAACCTTCTTCTGGTTCTTGGGACCTCTCTATTATGTGGTGGCATTGCAAACATTAAACTGGAACAAAAATATGACAGAAGACAGGCAGATGTAAACTCACTTATGCTTCTTCTGGCATTGTTGTGCCACATGCTTCCGATGCTGTTCAAATATAGTGCTGCCTCTGCTGCTTTCACTGCAGACCCTTCACTCCACTTGTCAAGAGCTTCTAGCATTGTGATGTTGATTGCATACTTTGCTTACCTTATCTTTCAACTGTGGACACACAGGCAACTATTTGAAGCTGATGATGAAGATGAAGATGGCAACAATGGTCCAGAAGAGCAAGCTGTGATTGGATTCTGGAGTGGCTTTGCTTGGCTGGCTGGGATGACTGTGTTCATTGCTTTGTTGTCTGAATATGTGGTGGATACAATTGAGGATGCATCAGATTCATGGGGTCTGTCTGTTAGCTTCCTCAGTATAATCTTGCTACCAATAGTTGGCAATGCAGCTGAACATGCAGGAGCAATCATATTTGCTTTCAAGAACAAGTTGGACATCTCATTGGGTGTTGCATTGGGTTCAGCAACTCAGATTGCCATGTTTGTGGTCCCCTTGTGTGTGATTGTTGCATGGATAATGGGTGTCAAAATGGACCTGAACTTCAACCTCCTTGAGACAGGTTCTCTTGCTTTGGCAATAATAGCCACAACCTTCACTTTACAGGATGGTACTTCTCACTACATGAAAGGCCTTGTTCTCTTGCTATGCTACATTGTAATTGGGGCTTGCTTCTTCGTGCAAATAATACCCTTGAATGAAGAATGGTGGGCATCCAGACTCAAACTCAGATTCAATGGATTGGTTATTATTTCATTCAAATCATTCTATTATGTCCAAAATGAAGGAAGAAAAAAGCTTGCAGTAGCTTTGCAAGTATTTTAA 1413 0.4324 MGSHQQEPWQLENGNLKGLSKEMRHGRTAHNKSSSSLRKKSDLTLVSKIRCGLLRNFLTNCQEVILGTKLSILFPAIPVAIIAQCYGLGRPWVFVLSLLGLTPLAERVSFLTEQVAYYTGPTVGGLLNATCGNVTELIIAIFALSSNKIAVVKYSLLGSVLSNLLLVLGTSLLCGGIANIKLEQKYDRRQADVNSLMLLLALLCHMLPMLFKYSAASAAFTADPSLHLSRASSIVMLIAYFAYLIFQLWTHRQLFEADDEDEDGNNGPEEQAVIGFWSGFAWLAGMTVFIALLSEYVVDTIEDASDSWGLSVSFLSIILLPIVGNAAEHAGAIIFAFKNKLDISLGVALGSATQIAMFVVPLCVIVAWIMGVKMDLNFNLLETGSLALAIIATTFTLQDGTSHYMKGLVLLLCYIVIGACFFVQIIPLNEEWWASRLKLRFNGLVIISFKSFYYVQNEGRKKLAVALQVF* 471
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g2022 470 Pfam Sodium/calcium exchanger protein 92 249 IPR004837 GO:0016021|GO:0055085
Apr4g2022 470 Pfam Sodium/calcium exchanger protein 279 417 IPR004837 GO:0016021|GO:0055085
Apr4g2022 470 TIGRFAM cax: calcium/proton exchanger 75 422 IPR004798 GO:0006816|GO:0015369
Apr4g2022 470 TIGRFAM caca2: calcium/proton exchanger 56 422 - -
Apr4g2022 470 PANTHER VACUOLAR CALCIUM ION TRANSPORTER 2 431 IPR004713 GO:0006812|GO:0008324|GO:0016021
Apr4g2022 470 PANTHER VACUOLAR CATION/PROTON EXCHANGER 3 2 431 - -
Apr4g2022 470 Gene3D - 121 260 IPR044880 -
Apr4g2022 470 Gene3D - 268 423 IPR044880 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g2022 Apr-Chr4 28927099 28931705 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g2022 7 430 Antiporters AT2G38170 71.363 0.0 594
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g2022 K07300 - gmx:100816231 692.189
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr4g2022 4 28927099 28931705 Apr4g2022 4 28927099 28931705 ECH
Apr4g2022 4 28927099 28931705 Apr10g0731 10 18394896 18399541 PCT