Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g2020 ATGACAGGTTCAGAAGCAGTAAATGGGACATTGAACTTGAAGCCAACTGAGACAAAGGGAAAGACCATTAAGTGCAAAGCCGCCGTGGCATATGGTCCGGGAGAGCCATTTGTGGTGGAACAAATCCTTGTTCATCCTCCTCAAAAGATGGAGGTTCGAATCAAAATCCTCTATACTTCTATTTGTCACACCGATCTTAGCGCTTGGAAAGCCGAGAACGAGTCTCAGCGTGCATATCCTCGGATTTTAGGCCATGAAGCATCCGGGATTGTGGAGAGTGTGGGGGAAGGGGTGAGTGACATTGAGGAAGGGGATACGGTGGTGCCAATATTCAATGGGGAGTGTGGTGAGTGTTCATATTGCAAGTGTGACCAAACCAACATGTGTGAGAGGTTTGGGGTGAACCCCATGAAGAAGGTGATGGAAAGTGATGGCACAAGCAGGTTCTCTAACATCAATGCCAAACCCATTTTCCATTTCTTGAACACTTCCACTTTCTCAGAGTACACGGTCGTTGACTCAGCCTGCGTGGTCAAACTTCACCCCCACCCCACCCTCAGCCTCAAAACCCTCACCTTGCTCAGCTGCGGGGTATCCACAGGGGTTGGAGCTGCATGGAATACAGCAAATGTACATTCTGGTTCCTCTGTGGCTGTCTTTGGGTTAGGAGCTGTTGGGCTCGCTGTTGCAGAAGGGGCACGAGCTAGGGGTGCATCCAAAATAATAGGCGTAGACATCAACCCTGACAAATTCATCAAAGCCCAAGCGATGGGAGTCACAGACTTCATAAATCCAAGCGATGAAGAGAAGCCAGTGTACGAGAGAATCAGAGAAATGACCGATGGCGGTGTACACTATAGTTTTGAATGTACTGGAAACTTGGACGTTCTAAGGGATGCCTTCTTGTCAGCGCATGAGGGTTGGGGATTGACTGTAGTATTGGGAATTCATCCATCACCAAGGTTACTTCCCATCCACCCAATGGAGCTCTTTGACGGTCGCAGAATTGTAGGATCAGTATTTGGAGGTTTCAAAGGGAAAAGTCAGTTGCCTCAATTTGCCACAGAATGTGGACATGGGGTGGTGAGGCTGGATAATTTCATCACTCACGAGTTACCCTTTGAGGAGATAAACAAAGCCTTCGATCTTTTGATTACTGGGAAATCACTGAGATGTCTTCTGCACTTGTGA 1191 0.4794 MTGSEAVNGTLNLKPTETKGKTIKCKAAVAYGPGEPFVVEQILVHPPQKMEVRIKILYTSICHTDLSAWKAENESQRAYPRILGHEASGIVESVGEGVSDIEEGDTVVPIFNGECGECSYCKCDQTNMCERFGVNPMKKVMESDGTSRFSNINAKPIFHFLNTSTFSEYTVVDSACVVKLHPHPTLSLKTLTLLSCGVSTGVGAAWNTANVHSGSSVAVFGLGAVGLAVAEGARARGASKIIGVDINPDKFIKAQAMGVTDFINPSDEEKPVYERIREMTDGGVHYSFECTGNLDVLRDAFLSAHEGWGLTVVLGIHPSPRLLPIHPMELFDGRRIVGSVFGGFKGKSQLPQFATECGHGVVRLDNFITHELPFEEINKAFDLLITGKSLRCLLHL* 397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g2020 396 Gene3D - 28 391 - -
Apr4g2020 396 PANTHER ALCOHOL DEHYDROGENASE 18 395 - -
Apr4g2020 396 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 186 355 IPR036291 -
Apr4g2020 396 Pfam Zinc-binding dehydrogenase 224 343 IPR013149 -
Apr4g2020 396 SUPERFAMILY GroES-like 18 205 IPR011032 -
Apr4g2020 396 Gene3D - 201 339 - -
Apr4g2020 396 Pfam Alcohol dehydrogenase GroES-like domain 51 179 IPR013154 -
Apr4g2020 396 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 84 98 IPR002328 GO:0008270|GO:0016491
Apr4g2020 396 PANTHER ALCOHOL DEHYDROGENASE-LIKE 3 18 395 - -
Apr4g2020 396 SUPERFAMILY GroES-like 346 395 IPR011032 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g2020 Apr-Chr4 28903981 28914214 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g2020 51 384 Monolignol Biosynthesis Gene Families AT2G21730 27.143 2.07e-15 75.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g2020 K00001 - gmx:100815166 654.44