Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g2018 ATGGTTATAGGAAAGATGCGCAAGTCTTTCAAGGATTCCCTCAAAGCTCTTGAAGCTGACATCCACTTTGCCAATACACTAGCTTCTGAGTATCCAAGAGATCGCGATGGTGCCTGCTTCCAAATGAGATTGTCCTACAGTCCAGCTGCTCAATTCTTCCTTTTTCTGATTCAGTGGAGTGATTGTCACCTTGCTGGAGCCTTAGGATTGCTTAGAATTCTTATATACAAGGCATATGAAGATGGAAAAACAACCATATCCATTTATGAAAGAAAAGCCACTTTGAAGGAGTTCTATGGTGTGGTCTTTCCCTCTTTATTGCAACTTCACAGAGGAGTCAGTGATGTTGAAGACCGGAAACAAAAACATCTGTGTGCTACCAAGTATAAGCGCAAAGATTTGACAAGCAAAGGAAAGCTTTCTGAAATTGACAGAGAGAGAGAAGAAGAGTGTGGTATTTGCATGGAGATGAACAACAAGGTTGTATTGCCCAATTGCAGTCATTCAATGTGTATGAAATGCTACCGAGACTGGCGTAGAAGATCTAAATCTTGCCCTTTCTGTCGGGACAGTTTGAAAACAGTAAATTCTAATGACCTTTGGATCTACATTAGCAGCAGTGAGATAAATGACTTGGCTTCAATCAACAAGGAGAATTTGAAGAGACTATTTATGTACGTAGAAAGTTTGCCTCTCATTGGCAGACCCTATATTCATGTCATATCTTCACCTCTAGTGATTGCAAATCAGTAG 753 0.4037 MVIGKMRKSFKDSLKALEADIHFANTLASEYPRDRDGACFQMRLSYSPAAQFFLFLIQWSDCHLAGALGLLRILIYKAYEDGKTTISIYERKATLKEFYGVVFPSLLQLHRGVSDVEDRKQKHLCATKYKRKDLTSKGKLSEIDREREEECGICMEMNNKVVLPNCSHSMCMKCYRDWRRRSKSCPFCRDSLKTVNSNDLWIYISSSEINDLASINKENLKRLFMYVESLPLIGRPYIHVISSPLVIANQ* 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g2018 250 ProSitePatterns Zinc finger RING-type signature. 166 175 IPR017907 -
Apr4g2018 250 PANTHER RING FINGER PROTEIN 41, 151 4 249 - -
Apr4g2018 250 PANTHER ZINC FINGER, C3HC4 TYPE (RING FINGER) PROTEIN 4 249 - -
Apr4g2018 250 Pfam Zinc finger, C3HC4 type (RING finger) 148 194 - -
Apr4g2018 250 ProSiteProfiles Zinc finger RING-type profile. 151 189 IPR001841 -
Apr4g2018 250 SMART ring_2 151 188 IPR001841 -
Apr4g2018 250 SUPERFAMILY RING/U-box 141 195 - -
Apr4g2018 250 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 135 200 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g2018 Apr-Chr4 28867749 28871175 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g2018 95 196 C3H Transcription Factor Family AT5G01960 27.103 3.31e-07 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g2018 K25840 - gmx:100814293 430.254
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr4g2018 4 28867749 28871175 Apr4g2018 4 28867749 28871175 ECH