Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g2017 ATGAAGTATTATATTATTCAGCAGAAACCATGTTCTCCTCTGAAGTCTCGTGTCAGTGTTAAGCTTTCTTTAGCCACCATTCTTCTCGCTCACTCACTCTCTCTCATTCATTGCCCTCTGGGTGCAGATGGTTGGTGTTTGTTTGAAATAGGCATGCACCTAAACACGAGGCCAATCAGCTTTCTTTGGAACTGTACTAAAAAGTTTGTCACGGCTGGGCTCATTACAGTGACTGTGTCTGATCGTTATGCGACTGTTATTCCAGTTAGAGGTGGCTCTATGTCTCCCACCTTTAATCCTAAAGCCGGTTCTTTGACGGAAGATTTTTTTGATGACTATGTCTTGGTTGAAAAATTTTGCCTCCATAACTACAAATTTTCTCATGGCGATGTGGTGGTCTTCCGATCGCCATTGAATCACAAGGAGACACACATAAAGAGAATAGTTGCGTTACCTGGTGAATGGTTTGGCAATTATCATAACCATGATGTGGTGAAGATTCCAGAAGGACATTGTTGGGTTGAGGGGGACAATGCTGCTTCTAGCATGGATTCGAAGTCATTTGGACCTATTCCTTTAGCTCTAGTTCGAGGAAGGGTTACGCATGTTGTGTGGCCTCCACAAAGGATAGGAGCTGTCAAGAGTACTTAA 651 0.4316 MKYYIIQQKPCSPLKSRVSVKLSLATILLAHSLSLIHCPLGADGWCLFEIGMHLNTRPISFLWNCTKKFVTAGLITVTVSDRYATVIPVRGGSMSPTFNPKAGSLTEDFFDDYVLVEKFCLHNYKFSHGDVVVFRSPLNHKETHIKRIVALPGEWFGNYHNHDVVKIPEGHCWVEGDNAASSMDSKSFGPIPLALVRGRVTHVVWPPQRIGAVKST* 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g2017 216 Gene3D Umud Fragment, subunit A 82 214 - -
Apr4g2017 216 PRINTS Bacterial leader peptidase 1 (S26A) family signature 82 98 IPR000223 GO:0006508|GO:0008236|GO:0016020
Apr4g2017 216 PRINTS Bacterial leader peptidase 1 (S26A) family signature 144 156 IPR000223 GO:0006508|GO:0008236|GO:0016020
Apr4g2017 216 PRINTS Bacterial leader peptidase 1 (S26A) family signature 167 186 IPR000223 GO:0006508|GO:0008236|GO:0016020
Apr4g2017 216 PANTHER MITOCHONDRIAL INNER MEMBRANE PROTEASE SUBUNIT 2 60 215 IPR037730 GO:0006465|GO:0006627|GO:0008236|GO:0042720
Apr4g2017 216 SUPERFAMILY LexA/Signal peptidase 86 213 IPR036286 -
Apr4g2017 216 Pfam Signal peptidase, peptidase S26 64 154 IPR019533 GO:0004252|GO:0006465
Apr4g2017 216 Pfam Signal peptidase, peptidase S26 162 205 IPR019533 GO:0004252|GO:0006465
Apr4g2017 216 CDD S26_SPase_I 89 200 IPR019533 GO:0004252|GO:0006465
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g2017 94 216 MADS-box Gene Family AT1G29960 34.109 6.89e-19 77.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g2017 K09648 - gmx:100527429 293.893
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr4g2017 4 28862432 28865280 Apr4g2017 4 28862432 28865280 ECH