Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g2011 ATGAGCAACTCTTATGGATTTCAATTCCTTTGTGGAATTCTTCTCTTATTCATGAAGACAAGTCAGAACTCAGCAACTGCAGCAACCATGCAAGGAAATGAAACTGATCTACACACTCTACTTGATTTCAAGAGTAGGATAGTTCATGATCCATATGATATTATGAGTTTGTGGAATGATTCCACCCATCACTGCAACTGGGTCGGAATTACTTGCAACAACTCCAATGGAAGAGTCATGTATTTGATCCTAGAAAACAAGGCACTAGCTGGAACTGTTCCACCTTCTATAGGAAATCTCACATTCCTTACAAGACTTAACCTTAGAAATAGTAGTTTCCATGGAGAGTTTCCTCAAGAAGTTGGACATCTACAATTCCTGCGGCATCTAAACATTGGTTACAATTCTTTTGGTGGTAGTCTTCCAAGTAATCTAAGTCACTGCAAAGAACTAAGCATATTATCTGCTGGTCATAACAACTTCACAGGAACAATTCCACCATGGATGGGAAACTCTTCATCTTTATCTTTAGTTAACCTTGCTGTGAACAACTTGCATGGGAGCATACCAAATTCACTAAATGGAAACTACTTGTCTGGAACAATTCCTCCTTCAATTTTTAATATTTCTTCCTTGCACTTTTTCACTGTTTCTCAAAATCATCTTCATGGTAACATCCCATTTGATGTTGGTTACACTCTTCCTAAACTTGAAACATTTGCTGGTGGGGTCAACTATTTCACTGGACCAATTCCTGTGTCACTGTCAAATGCATCGAGACTAAAAATTCTTGACTTTGCTGAAAATAATCTCACTGGCACAATTCCTAAGAACTTAGGAAGATTGCCCCATTTAATAAGACTCAATTTTGATGTTAATAGACTTGGAACTTGGAAAGCTGGTGATCTGAATTTTCTTGCTTCCTTGGTTAATTGTTCTGCTCTTGAAGTCTTGGGCCTTGCTGAAAATAGTTTTGGTGGAGAATTGCCAAGCTCAATTGCTAATCTTTCAACCCAATTAAATATACTTACATTAGGTTCCAATGCAATTCATGGAAGTATCCCTACTGGGATTGGGAACCTTGCAAACTTAACTGTTCTAGGATTGGAAGAGAACAGCCTAAGTAGGTCTGTTCCTGATTCAATAGGTATGCTTCAAAAGTTAGAAAGGTTGGATTTGAATGCCAACAATTTTTTTGGGTTAATCCCTTCATCCTTTGGAAACTTGACAAGGTTAACTATGTTATTCATGGAGGAGAACAACTTTGAGGGAAGTATACCAACAAGTCTAGGAAAATGCCAAAGCTTGTCGTTGTTAAATTTTAGCCATAATATGCTCAATGGAACCATACCAAGACAAGTCATTGCCTTGTCTTCTCTTTCAATTTACTTAGACTTGTCTCATAATGCTTTGATAGGGTCTGTGCCTATTGAAGTGGGCAAGTTGATCAATCTTGAAGAGTTGGACCTCTCAGAGAACAAATTGTCTGGCATGATTCCCTCCTCTCTTGGAAGCTGTATTAGCTTGGAATGGCTGCATTTACAGGGTAATTTTTTTGAGGGAAACATACCTTCAACTATACAGAATTTGAGAGGTTTACAAGATATAGATATGTCAAGCAATAACCTGTTTGGGGAGATTCCTGAATTTCTTGGTGAGTTCAAAGTGCTCGAGCATCTCAATCTTTCTTACAATGATTTTGAGGGAAAAGTACCATTGAATGGAATCTTCAAGAGTGTAACATCCTTTTCAATGTATGGAAATAGCAAGCTTTGTGGCGGTGTTCCTGAGTTATATTTACCTGCATGCACAATCAAAAAGTCCTCTTCCCTTGGCCCCAAGGTGGTTATCCTTGTAGCTATTGCTCTTGTATTTCTTCTATTACTATCTTGTTTTCTTACAAGCATTGTAGTAAAGAGAGCAAGAAAGAGAAGCTACAGATTAGCTAGCACAAAGGGTTTGGTATTGCCAATGTCATACTCAGAACTTGCAGAGTGCACTTGTGGGTTTTCCCAGGATAACCTTATTGGCTCAGGAAGTTTTGGTTCTGTGTACAAAGGAACTCTTTCAAGTGATGGATCAAGTTTTGCAGTTAAAGTATTGAATCTTCAACAAAAAGGAGCTTCAAGGAGTTTCTTTGATGAATGCCACGTTTTGAGAAGTATAAGGCACCGCAACCTTCTCAAGATTATAACTGCCATCTCTAGTGTTGATTATCAAGGTAATGATTTCAAAGCTTTGGTGTTTGAGTTCATGCCTAATGGAAGCCTAGAAGATTGGTTGCATCCTATAGATAATACAAAGACACTAACATTTATCCAAAGACTGAACATAGCAATTGATGTTGGTTGTGCATTGGAATATCTCCATCACTTCTGTGAAACTCCAATTGTTCATTGTGATATAAAGCCAAGTAATGTACTTCTTGACAATGATATGGTTGCTCATGTTGGTGACTTTGGATTAGCTACCTTTCTATTTGAAGAATCTAGCAGTTTTTCTAAGCATTCAACTATGTCCACTATCCTAAGGGGTTCTATTGGATACATCCCTCCAGAGTATGGAATGGGAGGCCACCCTTCAGCAATGGGAGATATTTACAGTTATGGGATACTATTACTAGAGGTTTTCACAAGAAAAAGACCGACGGATGAGAAGTTTGAAGGTAGCATTGGAATTCAGCAATTTGCAGCCTTGGCTTTACCAAATAATGCCATGAATATAATTGACCCTTTATTGCTTTCTGAGCAAGAATCTGAAGCAAATATAGAGGGTTGCTTGGTTCCAGTGTTGCATTTAGGAGTGTCATGTTCTACAACTTCACCAAGTGAAAGGAAGCCTATGACTGTGGTCGTTAACAAACTGCATGCAATCAAGAACTCGCTTGGAAATGGAACTTTTGCTCCTAAATGTTCTGCCTATGGTACCAATAGACCCCCATTTTGCTTATCCCCAAATGACAAGAAAGGTTGCAACTTTCCATTCCTCAAACTTGTTCCAAACAAGGGCATTCACACTCTTCATGCTGTGCCATCCAAAACTCAGGTGGACTTGGACAGTTTGATTAACCAAGCTCAAACAAAAGATGAACCAAGGACTGTTCATGTCAAGTTTCAGTTGATTCGCATTTGCAATTACGGGGAACACTTTCAAGTGGTTGGTGATGATCCTATGTTTGGTTCATGGAATCCTTCTAAAGCAGTTCCAATGACCTGGTCAGAGGGGCATATATGGACTGTAGAGCAGGATATACCTGTTGGAAAGTCAATCCAATTCAAGTTCATCCTGAAAAGGAAGCAAGGTGATATTGTATGGCAGCCCGGCCCAGATAGAATTATCCACACTTGGGAATCTATGCACTGTGTCACTGTTTGTGAGGATTGGGACAATGCTCAACTTCAGAAAATAACAGAGGAGAGTCAAAATGCATCCTCAAATGAAGAACCCAAGACTGAATCAGAAAAGGCAAATTCGGTTCTTCCTAAAGAGAAGCACAAATCCAATGCACCCAAAGTCCTGAAAAACACTTGTTGA 3534 0.3899 MSNSYGFQFLCGILLLFMKTSQNSATAATMQGNETDLHTLLDFKSRIVHDPYDIMSLWNDSTHHCNWVGITCNNSNGRVMYLILENKALAGTVPPSIGNLTFLTRLNLRNSSFHGEFPQEVGHLQFLRHLNIGYNSFGGSLPSNLSHCKELSILSAGHNNFTGTIPPWMGNSSSLSLVNLAVNNLHGSIPNSLNGNYLSGTIPPSIFNISSLHFFTVSQNHLHGNIPFDVGYTLPKLETFAGGVNYFTGPIPVSLSNASRLKILDFAENNLTGTIPKNLGRLPHLIRLNFDVNRLGTWKAGDLNFLASLVNCSALEVLGLAENSFGGELPSSIANLSTQLNILTLGSNAIHGSIPTGIGNLANLTVLGLEENSLSRSVPDSIGMLQKLERLDLNANNFFGLIPSSFGNLTRLTMLFMEENNFEGSIPTSLGKCQSLSLLNFSHNMLNGTIPRQVIALSSLSIYLDLSHNALIGSVPIEVGKLINLEELDLSENKLSGMIPSSLGSCISLEWLHLQGNFFEGNIPSTIQNLRGLQDIDMSSNNLFGEIPEFLGEFKVLEHLNLSYNDFEGKVPLNGIFKSVTSFSMYGNSKLCGGVPELYLPACTIKKSSSLGPKVVILVAIALVFLLLLSCFLTSIVVKRARKRSYRLASTKGLVLPMSYSELAECTCGFSQDNLIGSGSFGSVYKGTLSSDGSSFAVKVLNLQQKGASRSFFDECHVLRSIRHRNLLKIITAISSVDYQGNDFKALVFEFMPNGSLEDWLHPIDNTKTLTFIQRLNIAIDVGCALEYLHHFCETPIVHCDIKPSNVLLDNDMVAHVGDFGLATFLFEESSSFSKHSTMSTILRGSIGYIPPEYGMGGHPSAMGDIYSYGILLLEVFTRKRPTDEKFEGSIGIQQFAALALPNNAMNIIDPLLLSEQESEANIEGCLVPVLHLGVSCSTTSPSERKPMTVVVNKLHAIKNSLGNGTFAPKCSAYGTNRPPFCLSPNDKKGCNFPFLKLVPNKGIHTLHAVPSKTQVDLDSLINQAQTKDEPRTVHVKFQLIRICNYGEHFQVVGDDPMFGSWNPSKAVPMTWSEGHIWTVEQDIPVGKSIQFKFILKRKQGDIVWQPGPDRIIHTWESMHCVTVCEDWDNAQLQKITEESQNASSNEEPKTESEKANSVLPKEKHKSNAPKVLKNTC* 1178
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g2011 1177 SMART serkin_6 670 931 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr4g2011 1177 SMART LRR_typ_2 361 384 IPR003591 -
Apr4g2011 1177 SMART LRR_typ_2 385 408 IPR003591 -
Apr4g2011 1177 SMART LRR_typ_2 482 506 IPR003591 -
Apr4g2011 1177 SMART LRR_typ_2 409 433 IPR003591 -
Apr4g2011 1177 SMART LRR_typ_2 124 148 IPR003591 -
Apr4g2011 1177 SMART LRR_typ_2 530 554 IPR003591 -
Apr4g2011 1177 ProSitePatterns Protein kinases ATP-binding region signature. 676 699 IPR017441 GO:0005524
Apr4g2011 1177 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE, PUTATIVE-RELATED 158 959 - -
Apr4g2011 1177 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE, PUTATIVE-RELATED 31 192 - -
Apr4g2011 1177 Gene3D Ribonuclease Inhibitor 301 604 IPR032675 -
Apr4g2011 1177 Gene3D Ribonuclease Inhibitor 33 192 IPR032675 -
Apr4g2011 1177 Gene3D Ribonuclease Inhibitor 193 300 IPR032675 -
Apr4g2011 1177 Gene3D Phosphorylase Kinase; domain 1 653 751 - -
Apr4g2011 1177 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 158 959 - -
Apr4g2011 1177 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 31 192 - -
Apr4g2011 1177 CDD CBM20 1036 1128 - -
Apr4g2011 1177 SUPERFAMILY Starch-binding domain-like 1032 1125 IPR013784 GO:0030246
Apr4g2011 1177 Pfam Leucine rich repeat N-terminal domain 34 73 IPR013210 -
Apr4g2011 1177 Gene3D Immunoglobulins 1031 1129 IPR013783 -
Apr4g2011 1177 SUPERFAMILY L domain-like 58 309 - -
Apr4g2011 1177 ProSiteProfiles CBM20 (carbohydrate binding type-20) domain profile. 1028 1130 IPR002044 GO:2001070
Apr4g2011 1177 Pfam Leucine rich repeat 464 517 IPR001611 GO:0005515
Apr4g2011 1177 Pfam Leucine rich repeat 387 446 IPR001611 GO:0005515
Apr4g2011 1177 Pfam Leucine Rich Repeat 127 148 IPR001611 GO:0005515
Apr4g2011 1177 ProSitePatterns Serine/Threonine protein kinases active-site signature. 797 809 IPR008271 GO:0004672|GO:0006468
Apr4g2011 1177 MobiDBLite consensus disorder prediction 1148 1170 - -
Apr4g2011 1177 SMART CBM_20_2 1033 1124 IPR002044 GO:2001070
Apr4g2011 1177 ProSiteProfiles Protein kinase domain profile. 670 935 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr4g2011 1177 Gene3D Transferase(Phosphotransferase) domain 1 752 967 - -
Apr4g2011 1177 Pfam Protein kinase domain 671 895 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr4g2011 1177 MobiDBLite consensus disorder prediction 1138 1177 - -
Apr4g2011 1177 SUPERFAMILY Protein kinase-like (PK-like) 650 955 IPR011009 -
Apr4g2011 1177 CDD STKc_IRAK 676 955 - -
Apr4g2011 1177 SUPERFAMILY L domain-like 338 593 - -
Apr4g2011 1177 Pfam Starch binding domain 1033 1119 IPR002044 GO:2001070
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g2011 Apr-Chr4 28769417 28780101 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g2011 33 959 Receptor kinase-like Gene Family AT3G47570 44.399 0.0 778
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Apr4g2011 Pkinase 1.5e-39 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g2011 - - aprc:113862431 2339.69
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr4g2011 4 28769417 28780101 Apr10g0720 10 18121149 18124841 PCT