Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g2010 ATGAACCATCCTTGTGTAATCTCTAAGAGTCTATTGTTACAAATCCTTTGTGGATATCTTCTACTACGCATAATCTTAATCATGGACTCAGCAATAGCATCAACCCCAACAGGAAATGAAACTGATCTAGAAGCTTTACTTGATTTCAAGAGTAGGATAGTTGAAGATCCATTCAAGATTATGAGTATTTGGAATGATTCTACCCATCATTGCAATTGGATAGGAATCACTTGCAACATCTCAAATGGAAGGGTCACGTACTTGAGGCTTGAACAATTGAGATTAGGAGGCACTCTTACACCATTCATTGGAAACCTCACATACCTCACCATACTCAACTTGTTAAATAATAGCTTCCATGGTGAATTTCCTCAAGAAGTGGGTCGGTTACTTCACTTGCAACATCTAAACTTTAGCTTTAACAACTTTGGTGGGAGCATTCCAAGTAATCTTAGTCACTGCACAGAACTAAGGGTATTGGCTGCAGCTGCTAACAATCTTACAGGAACAATTCCAACTTGGATAAGGAATCTTTCTTCTTTGTCTAGAATTTCCTTTGGCTTGAACAATTTTCATGGAAGCATACCACATGAGGTAGGCCTTTTATCAAGCTTGACTGCACTTGTCCTATATGGGAATTTTTTGACTGGCACAGTTCCTTATTCAATCTATAACATTTCTTCATTGTACTACTTCACTTTTACTCAAAATCATCTTCATGGAAACTTACCAGCTAATATTGGATTTACTCTTCCAAACCTTCAAGTATTTGCTGGTGCTGTCAACAATCTCACAGGGAATGTTCCTGCATCATTGTTGAATGCATCAAAACTACAAATTCTTGACCTCTCTTTGAATAGTCTCACTGGAACACTGCCTAAGAACATAGGGGTCTTGAACAGGTTAACTAGACTTAGCTTTGAGTACAATAGACTTGGAACTGGGAAAACAGAAGACCTGAGCTTTCTTGATTCTTTGGTTAACTGCACAGCTCTTCAAGTTTTACGTCTAGGCAGAAATGGTTTTGGTGGAGTGTTGCCTCAATCAATTGCTAATTTCTCAAGACAATTGCACACATTTGTCATTAATTCAATTGGAATACATGGAAATATACCTTCTGGAATTGGCAATCTTGCTAACCTTGCTCTTATAGGATTGGAAGGAAACCGCCTAACCAGTAATCTTCCTGATACACTAGGTAAGCTGCAAAATCTGCAAGAATTGTATCTGAATGTCAACAAATTTTCAGGTAGAATTCCATCCACCTTAGGAAATTTATCTTTATTAATAAAACTCTTTTTGGAGGAGAACAACTTTGAGGGAAGCATACCTTCTAGTCTTGGAAAATGTAAGAAGTTATTGGTACTTAGCCTTTATAGTAACAAGCTTAGTGGCACCATACCAAAAGAAGTAATTAGCCTCTCTTCACTAGCAATATACTTGGATGTGTCTTATAATGCTTTATCAGGGACTCTACCAGGTGAAGTGAGTAGGCTACATAATCTTGGAGAGTTGGTGTTGTCTGAGAACAACTTTTCTGGAGTCATTCCATCTTCTCTTGGTAGCTGTATAAGTTTGGAAAGGCTGCAGTTGCAGGGTAATTCTTTTGAGGGGAGCATTCCTCAAACTTTAAAGAATTTGAGAGGCTTACTTTATATTGATCTTTCGCGCAATAACTTGTCGGGTAAGATACCGCAATTTCTTGGTGAGTTTACCGAGCTAAAACATCTCAATCTCTCTTCCAATAATTTTGAAGGTGAAATACCAAAGAATGGAATCTTCAAAAATGCAAGTTCCATTGCATTATATGGAAACAAAAAGCTATGTGGTGGTATCCCAGAACTAAATTTTCCTGCATGCACTATCAAGAAAGTCTCTTTGATTAGAAAACTTCTTGCCCCTAAGGTTGTTGTCCCAATAGCTAGTGCACTTATATTTGTACTATTTCTATCATGCTTTCTTACATTCTTCCCCATGGTAAAAAGAGCAAGAAAGAAAACTTCCACATCAACTACTGAAAAGGATTTGGCATTGGGAATTTCTTACTCAGAAATTATGCAGTGTACTGGTGGATTCTCACAGGATAACCTGATTGGCTCAGGAAGTTTTGGTTCTGTGTACAAAGGAACTCTTTCCAGTGATGGATCAAGTGTTGCAGTTAAAGTATTGAATCTTCAACAAAGAGGAGCTTCAAGGAGTTTCTTTGATGAATGCCACGTTTTGAGGAGTATAAGGCACCGCAACCTTCTCAAGATCATAACTGCCATCTCTAGTGTTGATCATCAAGGTAATGATTTCAAAGCTCTGGTGTTTGAGTTCATGCCTAATGGAAGCCTAGAAGATTGGTTGCATCCTATAGATAATGTGCATAATCGGACAAAGACACTGACATTTATCCAAAGACTGAACATAGCAACTGATGTTGCTTGTGCATTGGGATATCTCCATCACTTCTGTGAAACTCCAATTGTTCATTGTGACATAAAGCCAAGCAATGTACTTCTTGACAATGATATGGTGGCCCATGTTGGTGACTTTGGATTAGCTACATTTCTGTTTGAAGAATCAAGCAATACCAAACAATCAATTATATCAGCTAGCCTAAGGGGTTCTATTGGATACATCCCTCCAGAGTATGGAATGGGTGGCAAGCCTTCTACACTTGGAGATATTTACAGTTATGGGATACTACTATTGGAGATTTTCACAGGAAAAAGACCAACATATGAAGCATTTGAAGGTGGCATGGGAATTCACCAGTTTGTAGCAATGGCTTTACCTAACCATGTCATGGATATAGTTGATCCTTCATTGGCATTTGAACAAGACTTTGATGAGGAAAGTCAAGAATTTGAGGGTGAAGAGAAAGCCATAAGGAGGAACTATGAGATTGAACCCTCGGCTAAAGGTTTAGTGGAAGATTGCTTTGTATCATTGATGCAAATTGGAGTGTCTTGCTCTTCAACTCTTCCTAGTGAACGAATGCTAATCACTGAGGTGATCAACAAACTACATTCTATCAAGAGCTCGTTTATGAATTAA 3042 0.382 MNHPCVISKSLLLQILCGYLLLRIILIMDSAIASTPTGNETDLEALLDFKSRIVEDPFKIMSIWNDSTHHCNWIGITCNISNGRVTYLRLEQLRLGGTLTPFIGNLTYLTILNLLNNSFHGEFPQEVGRLLHLQHLNFSFNNFGGSIPSNLSHCTELRVLAAAANNLTGTIPTWIRNLSSLSRISFGLNNFHGSIPHEVGLLSSLTALVLYGNFLTGTVPYSIYNISSLYYFTFTQNHLHGNLPANIGFTLPNLQVFAGAVNNLTGNVPASLLNASKLQILDLSLNSLTGTLPKNIGVLNRLTRLSFEYNRLGTGKTEDLSFLDSLVNCTALQVLRLGRNGFGGVLPQSIANFSRQLHTFVINSIGIHGNIPSGIGNLANLALIGLEGNRLTSNLPDTLGKLQNLQELYLNVNKFSGRIPSTLGNLSLLIKLFLEENNFEGSIPSSLGKCKKLLVLSLYSNKLSGTIPKEVISLSSLAIYLDVSYNALSGTLPGEVSRLHNLGELVLSENNFSGVIPSSLGSCISLERLQLQGNSFEGSIPQTLKNLRGLLYIDLSRNNLSGKIPQFLGEFTELKHLNLSSNNFEGEIPKNGIFKNASSIALYGNKKLCGGIPELNFPACTIKKVSLIRKLLAPKVVVPIASALIFVLFLSCFLTFFPMVKRARKKTSTSTTEKDLALGISYSEIMQCTGGFSQDNLIGSGSFGSVYKGTLSSDGSSVAVKVLNLQQRGASRSFFDECHVLRSIRHRNLLKIITAISSVDHQGNDFKALVFEFMPNGSLEDWLHPIDNVHNRTKTLTFIQRLNIATDVACALGYLHHFCETPIVHCDIKPSNVLLDNDMVAHVGDFGLATFLFEESSNTKQSIISASLRGSIGYIPPEYGMGGKPSTLGDIYSYGILLLEIFTGKRPTYEAFEGGMGIHQFVAMALPNHVMDIVDPSLAFEQDFDEESQEFEGEEKAIRRNYEIEPSAKGLVEDCFVSLMQIGVSCSSTLPSERMLITEVINKLHSIKSSFMN* 1014
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g2010 1013 Pfam Leucine rich repeat N-terminal domain 40 79 IPR013210 -
Apr4g2010 1013 Gene3D Ribonuclease Inhibitor 153 249 IPR032675 -
Apr4g2010 1013 Pfam Leucine rich repeat 525 584 IPR001611 GO:0005515
Apr4g2010 1013 Gene3D Ribonuclease Inhibitor 250 319 IPR032675 -
Apr4g2010 1013 Gene3D Ribonuclease Inhibitor 41 152 IPR032675 -
Apr4g2010 1013 ProSitePatterns Protein kinases ATP-binding region signature. 698 721 IPR017441 GO:0005524
Apr4g2010 1013 SUPERFAMILY L domain-like 39 312 - -
Apr4g2010 1013 CDD STKc_IRAK 698 1004 - -
Apr4g2010 1013 Gene3D Phosphorylase Kinase; domain 1 656 773 - -
Apr4g2010 1013 Pfam Protein kinase domain 693 951 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr4g2010 1013 SMART LRR_typ_2 130 154 IPR003591 -
Apr4g2010 1013 SMART LRR_typ_2 571 596 IPR003591 -
Apr4g2010 1013 SMART LRR_typ_2 499 523 IPR003591 -
Apr4g2010 1013 SMART LRR_typ_2 378 401 IPR003591 -
Apr4g2010 1013 SMART LRR_typ_2 402 426 IPR003591 -
Apr4g2010 1013 SUPERFAMILY L domain-like 356 610 - -
Apr4g2010 1013 Gene3D Ribonuclease Inhibitor 320 620 IPR032675 -
Apr4g2010 1013 SUPERFAMILY Protein kinase-like (PK-like) 668 1004 IPR011009 -
Apr4g2010 1013 ProSitePatterns Serine/Threonine protein kinases active-site signature. 823 835 IPR008271 GO:0004672|GO:0006468
Apr4g2010 1013 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE, PUTATIVE-RELATED 36 1008 - -
Apr4g2010 1013 SMART serkin_6 692 1012 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr4g2010 1013 ProSiteProfiles Protein kinase domain profile. 692 1012 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr4g2010 1013 Gene3D Transferase(Phosphotransferase) domain 1 774 1012 - -
Apr4g2010 1013 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 36 1008 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g2010 Apr-Chr4 28763403 28767015 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g2010 39 1011 Receptor kinase-like Gene Family AT3G47570 43.552 0.0 782
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Apr4g2010 Pkinase 1.7e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g2010 - - gmx:106794146 1620.52