Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g1988 ATGCTTCAGATTCGGCTTAGTAAGGCTCCTGCATCAGAAGGGTCAGCAGGGGTGAAGCTGTCATCTGTTGAGACTGTTACAGTCGCGTGCCCTGACCATTTGGTCCTTGCTGATCTTCCTGTTGCAAAGGGCATTGGGGCAGCCAATGCTGCTTCTCTTGTTAAGACTTTGGGCCGTAGATCCCGCCGCCAGCTTGGCGAGCGAGTTCACTTCTGTGTTCGCTGTGATTTCCCCATCGCTATTTATGGACGGCTGAGCCCTTGTGAACATGCCTTTTGCCTAGACTGTGCTAGAAGTGATTCAATGTGCTACCTGTGTGATGAACGAATCCAGAAGATTCAAACAATCAAAATGATGGAAGGAATTCTCATATGTGCTGCTCCTCATTGTCTCAAGTCTTTCTTGAAGAAGGCTGAATTTGAATCTCATATCCAAGACAGCCACGCTAACCTTCTTCGACCCAATACAGAGAAAGAAGATGGAAATGAGTCAGAGGCACAAAGTGTCCGACAATCTACTGCTTCAGATTCCACTGCTCGAGGTCCCCAAAGGCCTGTTTTTTCTCCTGGTTCAAATTCCCAGCAACATGATCTGGAAGACAAAACTCGTCGACAGCACCCAAGAGAGCAACCGCCCTCAAGGTCAACTATGCAGCCAAAGCCACCCTATTTTGGTCAGCAACATCACCCTTCAGATAACATGTCTGGCTCGGTTGGAGGTGTACAACAGGGCTTTCATCAACAAAATTTTGATGTGCAGCATCCCCCACAAGAACCTTCTCAGTTTGCTGACAGGCAGCAAGCAGTTGGTCCAGAGACCCCGTTTCCTGAGTATCCAGCAATGCACCCTACACAACCTTCCAATATCCCCTCACTGGTTACTTCAAACCCAATGATGAATCCTCCTATGCCATTCGGTTATCCCCCTTACCCACATGAGCGAGCTCAACCATTTTATGCTTCTCCCTTTGATATGCCTAGGCAGGACTCAGCTTCTGAAATAGGTGGGGACCAGAGTTCATTACTGGGTTTCCCACAAGGTGTCCCAAGTGGCCCCAATTTTCCAGGAAATTATCCCCAGCCCTGGCATTCAGGGGTTGCTGGTGTGCCTTTTGAACAAGCACAGGGTGGTATGGTTGTGGATCCAAGGGATGCCAAAGGTATATTGGCACCCCAACCCATGCCCCTGCCACCACCACCTCCACCACCACCGCACATGTCACATTTGAAACAGAACTACTATTCTGGTGAGCTTGGACATGATGGTCAAGGTTATGGGTGGCAGCATGACAACCGTGATAGCTATGGAGGTCAAGGATAG 1320 0.4924 MLQIRLSKAPASEGSAGVKLSSVETVTVACPDHLVLADLPVAKGIGAANAASLVKTLGRRSRRQLGERVHFCVRCDFPIAIYGRLSPCEHAFCLDCARSDSMCYLCDERIQKIQTIKMMEGILICAAPHCLKSFLKKAEFESHIQDSHANLLRPNTEKEDGNESEAQSVRQSTASDSTARGPQRPVFSPGSNSQQHDLEDKTRRQHPREQPPSRSTMQPKPPYFGQQHHPSDNMSGSVGGVQQGFHQQNFDVQHPPQEPSQFADRQQAVGPETPFPEYPAMHPTQPSNIPSLVTSNPMMNPPMPFGYPPYPHERAQPFYASPFDMPRQDSASEIGGDQSSLLGFPQGVPSGPNFPGNYPQPWHSGVAGVPFEQAQGGMVVDPRDAKGILAPQPMPLPPPPPPPPHMSHLKQNYYSGELGHDGQGYGWQHDNRDSYGGQG* 440
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g1988 439 MobiDBLite consensus disorder prediction 386 439 - -
Apr4g1988 439 MobiDBLite consensus disorder prediction 151 287 - -
Apr4g1988 439 ProSitePatterns Zinc finger RING-type signature. 88 97 IPR017907 -
Apr4g1988 439 PANTHER E3 UBIQUITIN-PROTEIN LIGASE HAKAI-RELATED 1 413 IPR040383 GO:0016567|GO:0061630
Apr4g1988 439 ProSitePatterns Zinc finger C2H2 type domain signature. 125 148 IPR013087 -
Apr4g1988 439 MobiDBLite consensus disorder prediction 228 267 - -
Apr4g1988 439 MobiDBLite consensus disorder prediction 151 165 - -
Apr4g1988 439 MobiDBLite consensus disorder prediction 196 210 - -
Apr4g1988 439 MobiDBLite consensus disorder prediction 391 407 - -
Apr4g1988 439 MobiDBLite consensus disorder prediction 166 195 - -
Apr4g1988 439 CDD RING-HC_HAKAI_like 70 106 IPR040380 -
Apr4g1988 439 PANTHER E3 UBIQUITIN-PROTEIN LIGASE HAKAI 1 413 - -
Apr4g1988 439 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 69 120 IPR013083 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g1988 1 436 C2H2 Transcription Factor Family AT5G01160 44.719 8.38e-109 323
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g1988 K15685 - gmx:100817582 798.119
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr4g1988 4 28325913 28330097 Apr4g1988 4 28325913 28330097 ECH