Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g1967 ATGTCAACTTTGCAGATGTCACATGTTGATTTGGAGCAGGGGAATCATCGTCCTTCTGTTGTTGGGAGTGATGTGAGTGGTGAGGGGAGTTTGTGTTTTTCTGATGCTGATGATGGTTCTTGCTATTCTCGTTTCTACTCAACAAATGGTGGTTCATACGATGATTACAGCTTTGCTTGTGTTTCTGACCCTGAAGTTGGGGGTGTTCCTGAATCTGGTAGAGCTTCTTCTGTTTCTGATTGTTCTGTGGAGGTGGAAACTAGAAATGGGGTTCCTGAGATCAAGGTGCATTTGGCTAAAGTGGAGAGGGATTGTAGGATTTGTCACATGGGTTTGGAGAGTGAGAGTCATGAGTCTGGTGTTCCCATTGAATTGGGTTGTTCTTGTAAGGATGATTTGGCTGCTGCTCACAAGCACTGTGCTGAGGCGTGGTTCAAGATTAAGGGAAATAGGACCTGTGAAATTTGTCATTCCATTGCTCGGAATGTTCATGGAGCAAACGAGGAGTCAACTGAGCATTCAAGCGACAATAACAATGCAACTACAGCAGCCACACTCTCTATGCCTCCTCCTTCAGCAGAAACTCGAAGATTTTGGCATGGCCATCGCTTCCTGAATTTTCTGCTTGCTTGTATGGTTTTTGCGTTTGTCATATCATGGCTTTTTCACTTTAACGTGCCATCTTCCTAG 690 0.4464 MSTLQMSHVDLEQGNHRPSVVGSDVSGEGSLCFSDADDGSCYSRFYSTNGGSYDDYSFACVSDPEVGGVPESGRASSVSDCSVEVETRNGVPEIKVHLAKVERDCRICHMGLESESHESGVPIELGCSCKDDLAAAHKHCAEAWFKIKGNRTCEICHSIARNVHGANEESTEHSSDNNNATTAATLSMPPPSAETRRFWHGHRFLNFLLACMVFAFVISWLFHFNVPSS* 230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g1967 229 MobiDBLite consensus disorder prediction 172 189 - -
Apr4g1967 229 PANTHER OS01G0850200 PROTEIN 5 228 - -
Apr4g1967 229 PANTHER ZINC FINGER, RING-CH-TYPE 5 228 - -
Apr4g1967 229 SMART ringv_2 104 157 IPR011016 GO:0008270
Apr4g1967 229 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 93 167 IPR013083 -
Apr4g1967 229 Pfam RING-variant domain 105 156 IPR011016 GO:0008270
Apr4g1967 229 SUPERFAMILY RING/U-box 102 159 - -
Apr4g1967 229 MobiDBLite consensus disorder prediction 166 191 - -
Apr4g1967 229 CDD RING_CH-C4HC3_MARCH 105 157 - -
Apr4g1967 229 MobiDBLite consensus disorder prediction 1 22 - -
Apr4g1967 229 ProSiteProfiles Zinc finger RING-CH-type profile. 97 163 IPR011016 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g1967 Apr-Chr4 28092535 28095457 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g1967 69 229 C3H Transcription Factor Family AT5G05830 63.580 1.20e-69 210
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g1967 - - gmx:100808666 431.795
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr4g1967 4 28092535 28095457 Apr9g1388 9 23517865 23519864 ECH
Apr4g1967 4 28092535 28095457 Apr10g2077 10 33538392 33540294 ECH
Apr4g1967 4 28092535 28095457 Apr4g1967 4 28092535 28095457 ECH
Apr4g1967 4 28092535 28095457 Apr10g0672 10 16574928 16577420 ECH