Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g1950 ATGGCTGAGGGTTTTGAGCATTACCATGTCCCACAACAAAGTAGAAGGGACAAGCTGAGAGTTTTTGCTCAGAACCAACCTGGGTTTGTTGAATCTTCCTCTACCCTTCATCCTGCTTGTGCAACCTTACCCTCTCTCTACGATCCTTCACTTATTTCATCTGATTTGTTAGCTTGTGCTAACCAACAAGGTCACGGGTTTCACAGTAACCAGAACGAAGCTTGCAAAGGAAACCAAGGTGGTGGTGCTAAAGAAGAAGGTTCCAATTTGATGATGGGGTTTGCAGGAGGGGTTGTGAACAGTAGTAGTAACCCTTTTCTTTACCAGGCTCAAGGCCTTCAGAACCTTAGGGAATTTGATAGTAGCTACAATGATGGTGGTGAAATGTTGGTGTTCAAGCCTGAGCCTTTGTCTTTGTCTTTATCATCCCACAATAGCAACAACACTCATCACCCTTTGGAACTGAATCTTCAGCGATATGGGTCTGTTATTTATGGTGATAAGGTTGGTGGTGGTTGTGTGATTCCGGGTTTGGTTGGAGGAAACAGTGAAGTTTCAAGGAATTCAGTTCCACTTGGACCCTTTACGGGTTATGCTTCCATATTGAAGGAATCGAGGTTCTTGAAGCCTGCACAGCAGTTATTGGGAGAGCTATGTGATGTTGGGGTTCGTGGAATTTACGCTACTGAGAAGATTGCTCCTGATGCATCGTTGATGGAACCTCCTCATGAGAGTTTAAGTGCTAGTGGAATTGGTGGGGATGATCCACTTGGGGAATATGGGAATGATGGTAGGAAGAAAAAGTGCAGGCTATTAACCATGCTTGACGAGGTTTACAGGAGATACAGGCAGTATTATCAACAGATGCATGCAGTAGTAACTTCATTTGAGTATGTTGCTGGCCTTGGTAATGCAGCCCCATATGCAAGTTTGGCGATAAATGCCATGTCCAAACATTTTAGATGCTTGAAGAATGCTATTACTGACCAGCTTCAGTTCATCAACAAGGCTCATTTTCAGATAAGCAACAGGAAGGACGAATCTCCAAGGTTCCAAAACAGTGATAGGGGCACTTACAGCCAAAGGCCAGCTTTTCTTGAGCACCAACAACCAGTTTGGCGACCTCAAAGAGGACTCCCTGAGCGTGCTGTGAGTGTTCTTAGGGCTTGGTTGTTTGAACACTTTCTCCACCCTTATCCTACTGATACCGACAAGCTAATGTTGGCTAAACAAACTGGTCTATCTCGTAACCAGGTGTCTAATTGGTTTATTAATGCAAGAGTAAGGCTTTGGAAACCAATGGTGGAAGAAATACATATGCTAGAATCACAGCAAGCTCAAAAAAAGTCACAAAGGGAGGAGCATAGTAGGAACAATTTGAGTGATCAAATGCCTTCAGACAACTCTCTCGTCACTGAGAATCCATCTACCTCCACAGGTAAGTTTCAGGATGTGCCTTATAACCGCACTAGAAATGAACTTGCTAACATGCAAGTGAGGAGTCAGGAACAACTGAATCAGAATAACACAAGCAATCATCAGCAAGTGGGTGTTGGAGTGAGCATGGGGAGTGGTGGCGGTGCAAGCAACAATGGTGTGTCCTTGACACTTGGTCTTCACCAAAATCATGGTATTGGGTTATCTGAGCCCTTTAGCATGAGTGCAGCTCAGCGTTTTGGTGTTGCCCTTCAACCTGAGGGCTATGTTATAAGTGGTTTTGAATCACAAAATCGACATTTTGGGAGAGATGTTATTGGTGGAGGGCAACTGTTGCATGATTTTGTAGGCTGA 1791 0.4428 MAEGFEHYHVPQQSRRDKLRVFAQNQPGFVESSSTLHPACATLPSLYDPSLISSDLLACANQQGHGFHSNQNEACKGNQGGGAKEEGSNLMMGFAGGVVNSSSNPFLYQAQGLQNLREFDSSYNDGGEMLVFKPEPLSLSLSSHNSNNTHHPLELNLQRYGSVIYGDKVGGGCVIPGLVGGNSEVSRNSVPLGPFTGYASILKESRFLKPAQQLLGELCDVGVRGIYATEKIAPDASLMEPPHESLSASGIGGDDPLGEYGNDGRKKKCRLLTMLDEVYRRYRQYYQQMHAVVTSFEYVAGLGNAAPYASLAINAMSKHFRCLKNAITDQLQFINKAHFQISNRKDESPRFQNSDRGTYSQRPAFLEHQQPVWRPQRGLPERAVSVLRAWLFEHFLHPYPTDTDKLMLAKQTGLSRNQVSNWFINARVRLWKPMVEEIHMLESQQAQKKSQREEHSRNNLSDQMPSDNSLVTENPSTSTGKFQDVPYNRTRNELANMQVRSQEQLNQNNTSNHQQVGVGVSMGSGGGASNNGVSLTLGLHQNHGIGLSEPFSMSAAQRFGVALQPEGYVISGFESQNRHFGRDVIGGGQLLHDFVG* 597
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g1950 596 PANTHER BEL1-LIKE HOMEODOMAIN PROTEIN 100 572 - -
Apr4g1950 596 ProSiteProfiles 'Homeobox' domain profile. 370 433 IPR001356 GO:0003677
Apr4g1950 596 CDD homeodomain 373 434 IPR001356 GO:0003677
Apr4g1950 596 MobiDBLite consensus disorder prediction 461 487 - -
Apr4g1950 596 Pfam Associated with HOX 201 328 IPR006563 -
Apr4g1950 596 SUPERFAMILY Homeodomain-like 375 440 IPR009057 -
Apr4g1950 596 Pfam Homeobox KN domain 390 429 IPR008422 GO:0003677|GO:0006355
Apr4g1950 596 Gene3D - 376 438 - -
Apr4g1950 596 SMART HOX_1 373 437 IPR001356 GO:0003677
Apr4g1950 596 MobiDBLite consensus disorder prediction 442 487 - -
Apr4g1950 596 MobiDBLite consensus disorder prediction 442 460 - -
Apr4g1950 596 SMART prehox3 196 329 IPR006563 -
Apr4g1950 596 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 100 572 - -
Apr4g1950 596 Coils Coil 487 507 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g1950 Apr-Chr4 27767143 27773446 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g1950 1 596 Homeobox Transcription Factor Family AT5G02030 47.267 1.24e-130 393
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Apr4g1950 POX 1.2e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g1950 - - vun:114185080 873.233
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr4g1950 4 27767143 27773446 Apr4g1950 4 27767143 27773446 ECH