Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g1929 ATGGAGAAGGGTCAATGTTGGATGTGGACTAAGAGGAAGTACTCTATGAACTCTACTCTTGATTCCCCAGCTAAGTACCCCTCTTCCAATGATGACTATTCATGGGAAGAGCAAGCCTTTGCAAAAGATGCAGCTGGGTCTTGTTGCATATGGCCACCAAGATCATATTCTTGTAGCTTTTGCAGAAGGGAATTCAGGTCAGCACAGGCTTTAGGAGGCCATATGAATGTTCATAGAAGAGATAGAGCAAGACTGAAGCAACCTTGTAGCCCTCAAAATGAAACTCTGAGTCGAGATCTTGAAAAAACTCATCCCCAAAATCCAGTACAAAATTCTTTTACTTCTTTGGGTTATTTGTATCCATCTTCTCTTAGTGGGTTGGTTTGTAATAACACTAACCCTAATTCTGGTCCTTCTGATGTTCTTGCTTCACCTTCCAAGGTTTTAGCTACCTCGGTTAACAAGAGATGTACAGAGAAACCCCTGATTCCACTTCATAGTAATTCTTCTTGTTTCCATGGAAGCCATGATCAGACTTCTAAATCCTTGTCAAACTTAAATGAAGACTCTAGATTTTATTCACGTAAGTTTGACAGTGAAGCTGGTGTTGAGAAATTTTCGAAGGGGTTGGATTCTGGGTGTAGAAGTGAAAGAGATAATGATAAATCTGAGGTAGCTGTGAGTTTGAACTTGTTTGTGTGTCGAGCTCACCCGCCTGTGCAATTTGAGACTAAAGAGAGTGATGCAAGTTTCAAGAAGAGGAAAGGAGATTCTTCATCCATTCCATTCTTCCCACGGTCATGTTCCGTTGATAGGCATCATATGCAGTCACAGATGTTTGAATATAGCCCTAGTTCCATAGAAGGGATAGATCTGGAGCTAAGGCTTGGTTACAGGCCCAAGGTATAG 909 0.4147 MEKGQCWMWTKRKYSMNSTLDSPAKYPSSNDDYSWEEQAFAKDAAGSCCIWPPRSYSCSFCRREFRSAQALGGHMNVHRRDRARLKQPCSPQNETLSRDLEKTHPQNPVQNSFTSLGYLYPSSLSGLVCNNTNPNSGPSDVLASPSKVLATSVNKRCTEKPLIPLHSNSSCFHGSHDQTSKSLSNLNEDSRFYSRKFDSEAGVEKFSKGLDSGCRSERDNDKSEVAVSLNLFVCRAHPPVQFETKESDASFKKRKGDSSSIPFFPRSCSVDRHHMQSQMFEYSPSSIEGIDLELRLGYRPKV* 303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g1929 302 MobiDBLite consensus disorder prediction 83 107 - -
Apr4g1929 302 PANTHER OS07G0101800 PROTEIN 1 302 - -
Apr4g1929 302 PANTHER C2H2 AND C2HC ZINC FINGER PROTEIN 1 302 - -
Apr4g1929 302 Pfam C2H2-type zinc finger 56 80 - -
Apr4g1929 302 Gene3D Classic Zinc Finger 53 112 - -
Apr4g1929 302 SMART c2h2final6 56 78 IPR013087 -
Apr4g1929 302 ProSiteProfiles Zinc finger C2H2 type domain profile. 56 83 IPR013087 -
Apr4g1929 302 SUPERFAMILY beta-beta-alpha zinc fingers 53 82 IPR036236 -
Apr4g1929 302 ProSitePatterns Zinc finger C2H2 type domain signature. 58 78 IPR013087 -
Apr4g1929 302 MobiDBLite consensus disorder prediction 88 107 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g1929 Apr-Chr4 27377637 27378545 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g1929 29 87 C2H2 Transcription Factor Family AT2G37740 81.667 4.69e-26 103
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Apr4g1929 zf-C2H2_6 1.3e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g1929 - - gsj:114396020 413.69
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr4g1929 4 27377637 27378545 Apr4g1929 4 27377637 27378545 ECH
Apr4g1929 4 27377637 27378545 Apr10g0624 10 14599976 14600926 ECH