Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g1928 ATGTCTTATTTCTATTTCCCCTTTACTTGCCAAAAAAAGATGGACTTCAATACCCAAAACTCTAACAAATCTGAGATAAGGTGGAATTCAGATGATCAAGGTGGTCATGGACAAGTTAAATCTTATTCTTGTAACTTTTGCAAAAGAGGGTTCTCAAATGCACAAGCACTAGGAGGCCACATGAATATTCATAGAAGAGATAGAGCCAAGTTGAAGCAGTCTTGTGAAGAAAACTTGCTTTCCTTGGACATCTCAATCAAGACCACTATTGATCATAATGACCCTGTTAATTTGGAAGAGAAAATTTTGTTTGGTTTGGATTCTGGTGAAGAGAAGCATGCTAGGAATCATAAAAAGCCTTTCACTTTTCCTAACAAAGATGATCATGCACACCAAAGGGCCATGTTAGAAATTCCTCATATTCCTTCATTTGTTTTGGGGCAGAGGATTGAAGAGAAGAAAGCTGATTTAGACCTTGAGCTTAGGTTAGGAATTGAGCCGCAGAAGTCACCAACATTCAACACTCGAGCGTTCTTTTGA 540 0.3815 MSYFYFPFTCQKKMDFNTQNSNKSEIRWNSDDQGGHGQVKSYSCNFCKRGFSNAQALGGHMNIHRRDRAKLKQSCEENLLSLDISIKTTIDHNDPVNLEEKILFGLDSGEEKHARNHKKPFTFPNKDDHAHQRAMLEIPHIPSFVLGQRIEEKKADLDLELRLGIEPQKSPTFNTRAFF* 180
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g1928 179 PANTHER OS07G0101800 PROTEIN 80 168 - -
Apr4g1928 179 PANTHER OS07G0101800 PROTEIN 3 76 - -
Apr4g1928 179 ProSiteProfiles Zinc finger C2H2 type domain profile. 42 69 IPR013087 -
Apr4g1928 179 ProSitePatterns Zinc finger C2H2 type domain signature. 44 64 IPR013087 -
Apr4g1928 179 Gene3D Classic Zinc Finger 16 94 - -
Apr4g1928 179 PANTHER C2H2 AND C2HC ZINC FINGER PROTEIN 3 76 - -
Apr4g1928 179 PANTHER C2H2 AND C2HC ZINC FINGER PROTEIN 80 168 - -
Apr4g1928 179 SUPERFAMILY beta-beta-alpha zinc fingers 40 68 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g1928 Apr-Chr4 27370307 27370846 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g1928 38 172 C2H2 Transcription Factor Family AT3G53820 36.296 1.91e-17 73.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Apr4g1928 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g1928 - - ccaj:109793777 277.715
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr4g1928 4 27370307 27370846 Apr4g1928 4 27370307 27370846 ECH