Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g1925 ATGGCCAACCTTTTCAAACTCTTAACTTTTTTGGTTTTCCTTTTGATCCCAGTTTCATCTCAGATTGACCAGCTTCTGTATGCTGGATTTAAGGATGTGGGTGCCAACAACCTAACCTTGAATGGGGTGGCAAAGATAGAGGAAAATGGGATACTGAAATTGACAAATGAAACAAGCAGATTAATGGGTCATGCTTTTTACCCATTACCTTTTCAGTTCAAAAACTCCACAACTGGTGAAGTTTTCTCCTTTTCTTCATCATTTGCTCTGGCTATTGTCCCTGAGTATCCCAAACTTGGTGGCCATGGCTTGGCCTTCACGATAGCACGCTCTAAGGATCTCAATGCTCTACCTAGTCAGTACCTGGGTCTCCTTAACTCCAACGATGTTGGTAATTTCTCCAACCATCTCTTTGCTGCTGAGTTTGACACTGTCCAAGACTTTGAGTTCGGGGATATTAATGATAACCATGTTGGAATCGACATCAATAGCTTGCAGTCCAATGCATCTGTTAATGCCAGTTACTACACTAGTGATTCAACCAATGAGGGTCTAAATCTGAAAAGTGGGAAACCCATTCTAGCTTGGGTTGATTATGATTCTGCACAAAATCTTGTCAATGTTACAATTTCTCCAACTTCAACAAAACCCAAAAAACCAATCTTGTCCTTTCATGTGGATCTCAAACCCATTTTTAATGATACTATGTATGTTGGGTTCTCTGCATCAACGGGTTTGCTTGCTAGCTCCCATTACATCTTGGGTTGGAGCTTTAAAATCAATGGACCAGCACCACCCCTTGATCTCTCTTCTCTCCCACAACTTCCACAACCGAAGAAGAAAGAGACATCTTTGGTAATAGGGGTTTCAGTCAGTGTTGTTGTTATTGTGTTAGGTGCTGTATCCATTGCTATTTACTTGTTTAGAAAGATCAAGAACGCTGATGTGATAGAAGCATGGGAACTTGAAATTGGGCCTCATAGGTACTCATATCAAGAGCTAAAGAAAGCTACGAGAGGTTTCAAGGACAAAGAGCTACTCGGGCAGGGTGGTTTTGGCAGAGTTTACAAGGGAACATTGCCTATTTCAAAGATACAAGTTGCTGTTAAGCGAGTTTCACACGAATCTAAACAAGGCCTGAGGGAATTTGTGTCGGAAATAGCCAGTATAGGCCGGCTTCGCCACCGGAATTTGGTTCAGTTACTTGGCTGGTGTCGCCGCCGCGGTGACCTGCTTCTTGTGTATGATTTCATGGCTAATGGGAGCTTGGACAAGTACTTGTTTGATGAACCAAAGATTGTCCTAAGTTGGGAGCAAAGGTTCAAGATAATAAAGGGGGTTGCTTCAGCTCTTTTGTATCTACATGAGGGGTATGAGCAGGTGGTGATACACAGAGATGTGAAGGCTAGTAATGTGCTGCTAGATTTTGAACTGAATGGAAAACTAGGTGATTTTGGTTTGGCAAGATTGTATGAACATGGGGCAAATCCAAGCACCACAAGGGTGGTGGGCACCTTAGGCTATTTGGCACCAGAGTTGCCTAGAACAGGAAAGGCAACAACAAGTTCTGATGTGTTTGCATTTGGGGCACTTTTGTTAGAGGTGGCTTGTGGGCGCAGGCCTATTGAGCCTAAGGCATTGCCAGAAGAGTTGGTTTTGGTGGATTGGGTGTGGGAGAGGTACAAAGAGGGGAGAATACTTGATGTGGTGGATCCTAAACTGAATGGCAATTTTGATGAAAAGGAGGTGCTCATGGTGTTGAAATTGGGGTTGATATGCTCCAATGATGTGCCTTCTGCTAGGCCTAGCATGAGACAAGTTTTGAGGTATTTGGATGGGGAAGTTGAGTTGCCAGAGGACTTGAGAAAGCCAGGAGATATAAGCCACCAGGAGGGCTTTGATGAATTCTTGCACTCACTTGCATCTTCTTCCTTTGATAAGATGAGTTCAAGCTCCAATTTTGGAAATAGAGACATGGATACTAGTTTTCTTTCATTTGCTAATTCACCTCATTCCCTTCTCCATGGTAGAGGAGAAACAAGGTGA 2046 0.4321 MANLFKLLTFLVFLLIPVSSQIDQLLYAGFKDVGANNLTLNGVAKIEENGILKLTNETSRLMGHAFYPLPFQFKNSTTGEVFSFSSSFALAIVPEYPKLGGHGLAFTIARSKDLNALPSQYLGLLNSNDVGNFSNHLFAAEFDTVQDFEFGDINDNHVGIDINSLQSNASVNASYYTSDSTNEGLNLKSGKPILAWVDYDSAQNLVNVTISPTSTKPKKPILSFHVDLKPIFNDTMYVGFSASTGLLASSHYILGWSFKINGPAPPLDLSSLPQLPQPKKKETSLVIGVSVSVVVIVLGAVSIAIYLFRKIKNADVIEAWELEIGPHRYSYQELKKATRGFKDKELLGQGGFGRVYKGTLPISKIQVAVKRVSHESKQGLREFVSEIASIGRLRHRNLVQLLGWCRRRGDLLLVYDFMANGSLDKYLFDEPKIVLSWEQRFKIIKGVASALLYLHEGYEQVVIHRDVKASNVLLDFELNGKLGDFGLARLYEHGANPSTTRVVGTLGYLAPELPRTGKATTSSDVFAFGALLLEVACGRRPIEPKALPEELVLVDWVWERYKEGRILDVVDPKLNGNFDEKEVLMVLKLGLICSNDVPSARPSMRQVLRYLDGEVELPEDLRKPGDISHQEGFDEFLHSLASSSFDKMSSSSNFGNRDMDTSFLSFANSPHSLLHGRGETR* 682
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g1925 681 ProSitePatterns Protein kinases ATP-binding region signature. 347 370 IPR017441 GO:0005524
Apr4g1925 681 Pfam Legume lectin domain 25 272 IPR001220 GO:0030246
Apr4g1925 681 PANTHER - 4 666 - -
Apr4g1925 681 SMART serkin_6 341 611 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr4g1925 681 Pfam Protein kinase domain 341 545 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr4g1925 681 CDD lectin_legume_LecRK_Arcelin_ConA 24 262 IPR001220 GO:0030246
Apr4g1925 681 ProSitePatterns Serine/Threonine protein kinases active-site signature. 462 474 IPR008271 GO:0004672|GO:0006468
Apr4g1925 681 Gene3D Transferase(Phosphotransferase) domain 1 418 625 - -
Apr4g1925 681 ProSiteProfiles Protein kinase domain profile. 341 617 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr4g1925 681 SUPERFAMILY Concanavalin A-like lectins/glucanases 30 280 IPR013320 -
Apr4g1925 681 CDD STKc_IRAK 347 613 - -
Apr4g1925 681 SUPERFAMILY Protein kinase-like (PK-like) 323 633 IPR011009 -
Apr4g1925 681 Gene3D - 24 261 - -
Apr4g1925 681 PANTHER L-TYPE LECTIN-DOMAIN CONTAINING RECEPTOR KINASE S.4 4 666 - -
Apr4g1925 681 Gene3D Phosphorylase Kinase; domain 1 326 417 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g1925 Apr-Chr4 27323786 27325831 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g1925 18 667 Receptor kinase-like Gene Family AT3G55550 59.970 0.0 784
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Apr4g1925 Pkinase 3.5e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g1925 - - gmx:100784346 1141.72
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr4g1925 4 27323786 27325831 Apr9g1352 9 23142390 23144346 ECH
Apr4g1925 4 27323786 27325831 Apr10g2039 10 33222039 33224429 ECH
Apr4g1925 4 27323786 27325831 Apr4g1925 4 27323786 27325831 ECH