Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g1915 ATGTCGTTGAACCAAGGTGGTGGTGGTGGCGGCGAAGAAGATGAGCTCTATGAGCAACTATGGAAGGCATGTGCAGGACCTCATGTGGAAGTTCCTCGTGCAGGCCAAAGGGTCTTCTATTTCCCTCAGGGACACATGGAACAATTAGAAGTATCAACAAATCAGGAACTAAATCAGAGGATTCCACTGTTCAAACTTCCCTCCAAGATCCTCTGTCGTGTCGTCAACGTCCATTTACTGGCTGAGCAAGAAACAGATGAAGTTTATGCACAGATTACTCTAGTGCCGGAATCAAATAAAACTGAACCTACAAGCCCTGATCCGTGCCCTGCTGAACATCCAAGGCCAAGAGTTAACTCCTTCTGCAAGGTCTTAACAGCCTCTGATACAAGCACCCATGGTGGCTTCTCTGTCCTCAGGAAGCATGCCACAGAATGCCTTCCAATGCTGGACACATCCCAATCCCAATCAACCCCAACTCAGGAATTGGTTGCCAAGGATCTTCATGGTTATGAATGGCGCTTTAAGCATATATTTAGAGGTCAGCCACGTAGACACTTGCTCACAACTGGATGGAGTACTTTTGTGACTTCTAAGAGATTAGTTGCTGGAGATACCTTTGTGTTCCTGAGAGGGAACAATGGACAATTGCGTGTTGGAGTGAGGCGTGTTGCTCCTCTGCAGAACAGCATGCCTTCTTCTGTGATTTCCAGTCAGAGCATGCACATTGGAGTTCTTGCAACTGCATCTCATGCAGTTGCAACTCAGACTCTTTTCGTTGTATATTATAAGCCAAGGACCAGCCAATTCATTGTGAGTGTGAACAAATATTTGGAGGCTATCAACCAAAAATGTAATGTTGGTATGAGATTCAGGATGAGGTTTGAAGGGGATGATTCCCCTGAGACTGACAAAAGATTTTGTGGCACAATAGTTGGAGTAGAAGATATTTCTCCTCATTGGGAAAATTCAACATGGCGTTCACTTAAGGTTCAATGGGATGAAGCTGCATCTATTCCAAGACCTGATAGAGTTTCACCATGGGAGATAGAACCCCTTATTGCTTCTGTTCCCACGTCATTATCTCAACATTCGGTTGTAAAGAATAAAAGGCCTCGACCAGCAAGTGAATTTCCAGATCTTGTAGACACACCATTAGCTGCCTCTACTTTTTGGAATTCTGGGATGACACATTCTGAGATGACAAAACTTAGTGTCATGGCTGAGAGCAAAAGGAGTGACAATAGCATCCACATGTGGCATCACAAGCAGAATGATAATAGTAAAATCAGCAGCAATGGTATATCAATGAATCAGACAGAAGCAAGTTGGCTATCTTCTCGTTCTTGTGCTCCTTCTCACTTCTATCATGACACAACCGATGATAACAAGAGTGTCGCAGCTTGGCCTATTTCAAAAACTCACTCAGAGAGATTGAATAGTGACCATTTGCATGACAAGTTTGAAAAGGATATCACCAAACTAGAGGCTGCTACAAGCTGTAGATTGTTTGGGATTGAGCTTATTGATCATGCCAGAAACAACTCTCCTTCTGTAGAGAAGACTCTCGTGGATGCAACAAATGCATGTGGAGTCACATCTGAGTCCAGAACTGATGTAAGACTTAAGTGTGATATCTCAATGGCTTCTAAAGAATGGAAAAAAGAACAGCCACAAGTATCTCCAAAAGAGACTCAAATCAAGCAAATCGGTAGCAGAAGTTGTACTAAGGTTCGAATGCAAGGGGTTGCAGTGGGGCGTGCTGTGGATTTGACCACGTTAAATGGGTATGATCAACTTGTAGATGAATTGGAGAAGATGTTCGACATAAATGGACAGCTTCAATCAAGGGATAAATGGGAAATTGTCTTCACTGATGATGAAGGGGATATGATGCTTGTTGGCGATGATCCATGGCCTGAATTCTGTAACATGGTGAGAAGAATCTTCATTTGTTCCAGCCAGGATGTGCACAAAATGAGTTCAGGGAGCAAACTTCCCATCTCTTCTATAGAAGAAGAGACTGTAATTTCAGACACAGCTCATACCTGA 2052 0.4337 MSLNQGGGGGGEEDELYEQLWKACAGPHVEVPRAGQRVFYFPQGHMEQLEVSTNQELNQRIPLFKLPSKILCRVVNVHLLAEQETDEVYAQITLVPESNKTEPTSPDPCPAEHPRPRVNSFCKVLTASDTSTHGGFSVLRKHATECLPMLDTSQSQSTPTQELVAKDLHGYEWRFKHIFRGQPRRHLLTTGWSTFVTSKRLVAGDTFVFLRGNNGQLRVGVRRVAPLQNSMPSSVISSQSMHIGVLATASHAVATQTLFVVYYKPRTSQFIVSVNKYLEAINQKCNVGMRFRMRFEGDDSPETDKRFCGTIVGVEDISPHWENSTWRSLKVQWDEAASIPRPDRVSPWEIEPLIASVPTSLSQHSVVKNKRPRPASEFPDLVDTPLAASTFWNSGMTHSEMTKLSVMAESKRSDNSIHMWHHKQNDNSKISSNGISMNQTEASWLSSRSCAPSHFYHDTTDDNKSVAAWPISKTHSERLNSDHLHDKFEKDITKLEAATSCRLFGIELIDHARNNSPSVEKTLVDATNACGVTSESRTDVRLKCDISMASKEWKKEQPQVSPKETQIKQIGSRSCTKVRMQGVAVGRAVDLTTLNGYDQLVDELEKMFDINGQLQSRDKWEIVFTDDEGDMMLVGDDPWPEFCNMVRRIFICSSQDVHKMSSGSKLPISSIEEETVISDTAHT* 684
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g1915 683 CDD B3_DNA 120 223 IPR003340 GO:0003677
Apr4g1915 683 SUPERFAMILY DNA-binding pseudobarrel domain 113 252 IPR015300 -
Apr4g1915 683 Gene3D - 284 357 - -
Apr4g1915 683 ProSiteProfiles B3 DNA-binding domain profile. 121 225 IPR003340 GO:0003677
Apr4g1915 683 ProSiteProfiles PB1 domain profile. 573 654 IPR000270 GO:0005515
Apr4g1915 683 Pfam AUX/IAA family 554 609 IPR033389 -
Apr4g1915 683 Pfam AUX/IAA family 614 657 IPR033389 -
Apr4g1915 683 PANTHER AUXIN RESPONSE FACTOR 10 673 - -
Apr4g1915 683 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 10 673 IPR044835 GO:0003677|GO:0006355|GO:0009725
Apr4g1915 683 SUPERFAMILY CAD & PB1 domains 574 649 - -
Apr4g1915 683 Pfam Auxin response factor 249 330 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Apr4g1915 683 SMART B3_2 121 225 IPR003340 GO:0003677
Apr4g1915 683 Pfam B3 DNA binding domain 121 223 IPR003340 GO:0003677
Apr4g1915 683 Gene3D - 118 224 IPR015300 -
Apr4g1915 683 Gene3D - 569 661 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g1915 Apr-Chr4 27168109 27174064 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g1915 10 666 B3 DNA Binding Superfamily AT4G23980 56.798 0.0 684
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Apr4g1915 B3 9.6e-22 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g1915 K14486 - gmx:100780060 1091.64