Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g1914 ATGGAATCACCTGGATCTTCGTTTTGGTGCTACAGATGCAACCGCATCGTTAGGGTTCCAATGGTCTCCGAACAAGACCCCACTCTTCTATGCCCCGATTGCAATTCTGGTTTTCTCGAAGAAATCCGAAACCCTACCCTCTCCCACTCCCGCCGCCGCGACCGCTCACCTTTCAATCCGGTCATCGTCCTTCGCGGCGGAAACGACGTCGTCTCGCCCGAAACGCGCAACTTCGAGCTCTATTACAACGACACCGGTTCAGGTTCCGGTTCAGGATCCGGTCTTCGTCCATTACCGGCTGGCGTAACGGAGTTTCTAATGGGTTCAGGGTTCGACCACTTACTAGACCAACTGGCTCAGCTCGAAGGAACCGCGGTTCGGCTGGACCGGCCCCCACCCCCAGCCGCATCAAAAGCCGCGATCGAGTCGATGCCAGTGGTTAAAATCATCGCCAGCCATATCCACGCCGAGTCACACTGCACTGTTTGTATGGAACCCTTCCAATTAGATTGCGACGCACGTGAGATGCCGTGCGGTCACGTGTACCATTCCGATTGCATCGTGCCGTGGCTGTCCGTCCGAAACTCGTGCCCCGTGTGTCGCCATGAGCTTCCCGCCGACGCCACTGGCGGTGCAGGGGATGATACTGTGGGGTTAACCATATGGAGACTCCCCGGGGGAGGATTCGCTGTGGGAAGGTTCATTGGTGGTAGGGAACTTCCTGTTGTGTACACCGAAATGGACGGTGGGTTTAACGGCGTTAACGGTGCTCCCAGGAGGATCTCTTGGGATTCCTCTGTTGGAAGATCGAGAGAAAATAGGGGATTCGGTGCGGTTCTGCGGAATCTTGCTTCCTACTTTGGGAGGGTTAGGAGGAATTTTTCTCGTTCCTCGACGAGAAATTCTGGTGTCAATGTAAGATCTCGCTCTGCCTCAACGGTTTTTTCTAGATTCAGGGGCTCGTAG 966 0.5518 MESPGSSFWCYRCNRIVRVPMVSEQDPTLLCPDCNSGFLEEIRNPTLSHSRRRDRSPFNPVIVLRGGNDVVSPETRNFELYYNDTGSGSGSGSGLRPLPAGVTEFLMGSGFDHLLDQLAQLEGTAVRLDRPPPPAASKAAIESMPVVKIIASHIHAESHCTVCMEPFQLDCDAREMPCGHVYHSDCIVPWLSVRNSCPVCRHELPADATGGAGDDTVGLTIWRLPGGGFAVGRFIGGRELPVVYTEMDGGFNGVNGAPRRISWDSSVGRSRENRGFGAVLRNLASYFGRVRRNFSRSSTRNSGVNVRSRSASTVFSRFRGS* 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g1914 321 Pfam zinc-ribbon 7 42 IPR039525 GO:0061630
Apr4g1914 321 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 127 207 IPR013083 -
Apr4g1914 321 Pfam Protein of unknown function (DUF1117) 217 316 IPR010543 -
Apr4g1914 321 SMART ring_2 160 200 IPR001841 -
Apr4g1914 321 CDD RING-H2_RNF181 160 204 - -
Apr4g1914 321 ProSiteProfiles Zinc finger RING-type profile. 160 201 IPR001841 -
Apr4g1914 321 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RHC2A-RELATED 2 277 - -
Apr4g1914 321 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 2 277 - -
Apr4g1914 321 Pfam Ring finger domain 159 201 IPR001841 -
Apr4g1914 321 SUPERFAMILY RING/U-box 140 206 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g1914 Apr-Chr4 27126600 27128789 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g1914 97 207 C3H Transcription Factor Family AT5G01980 43.243 1.24e-24 102
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g1914 - - gmx:121172634 450.284
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr4g1914 4 27126600 27128789 Apr9g1347 9 23103584 23104717 ECH
Apr4g1914 4 27126600 27128789 Apr10g2033 10 33186715 33188355 ECH
Apr4g1914 4 27126600 27128789 Apr4g1914 4 27126600 27128789 ECH