Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g1911 ATGCTAGCTTTACCACTCAAATCACAATTGATCCCATCTGGGTACCTCCCAAGACCACCCAACAAGCTTCGGTTTCACCACAACGTGAGCCTCACTGTCTCCATCACCGTTGGCACACCCCCACAAAACGTGTCCATGGTCATTGACACAGGAAGTGAACTCTCTTGGCTCCATTGCAACACAACCACCACACGGGTCCTACCCGACCCGATTTTAAACCCGAATCTCTCTTCATCCTACTCACCCATCTCCTGCTCCTCATCAACATGCACAACCCGAACCCGAGACTTCCCCATACCCGCTTCCTGTGACTCCAACAACCTCTGCCACGCCACTCTCTCATATGCTGACTCTTCTTCCTCAGAAGGGAACCTCGCTTCTGACACATTCGGGTTCGGATCCTCCAATAACCCGGGAATTGTATTCGGGTGCATGAACTCATCTTATAGTACTAACTCCGATTCGGACTCCAACATAACCGGGTTAATGGGCATGAATCTCGGGTCCCTCTCCTTGGTTTCCCAATTAAAAATCCCCAAATTCTCGTACTGCATATCGGGATCCGATTTCTCGGGAATTTTACTTCTCGGAGGATCCAATTTTTCTTGGGTCGGGTCATTGAACTACACTCCTTTGGTTCAAATATCCACTCCCTTACCCTATTTCGACAGGTCCGCATATACGGTTCGGCTCGAGGGAATTAAGGTTTCGGATAAGTTACTAAACATATCGGGTACTGCTTTTGTTCCAGACCATACCGGGGCGGGTCAAACCATGTTTGATTTGGGTACCCAATTCACGTTTTTACTTGGTCCGGTTTATAATGTGTTAAGAGAAGAGTTTTCGAGCCAAACGAATAGTACTTTACGAGCACTGGATGATCCGAATTTTGTGTTTCAAATAGCAATGGATCTTTGTTACCGGGTACCCATGAACCAAACGAACTTACCCTCGTTACCAAGTGTGAGTTTGGTTTTTGAAGGAGCTGAAATGCGGGTTTCGGGTGAACAGCTTTTGTATCGGGTACCCGGTTTGGTTAGGGGGAATGACTCGGTGTATTGCTTCACATTTGGGAACTCGGATTTGCTAGGTGTGGAGGCATTTATCATCGGTCATCAGCAACAACAGAACATCTGGATGGAGTTTGATCTTGTCGAATCTAAGGTTGGTTTTGGTCATCTACGTTGTGATTTGGTTGGACAGAGACTACTTGGCTTGGGTTGA 1224 0.4714 MLALPLKSQLIPSGYLPRPPNKLRFHHNVSLTVSITVGTPPQNVSMVIDTGSELSWLHCNTTTTRVLPDPILNPNLSSSYSPISCSSSTCTTRTRDFPIPASCDSNNLCHATLSYADSSSSEGNLASDTFGFGSSNNPGIVFGCMNSSYSTNSDSDSNITGLMGMNLGSLSLVSQLKIPKFSYCISGSDFSGILLLGGSNFSWVGSLNYTPLVQISTPLPYFDRSAYTVRLEGIKVSDKLLNISGTAFVPDHTGAGQTMFDLGTQFTFLLGPVYNVLREEFSSQTNSTLRALDDPNFVFQIAMDLCYRVPMNQTNLPSLPSVSLVFEGAEMRVSGEQLLYRVPGLVRGNDSVYCFTFGNSDLLGVEAFIIGHQQQQNIWMEFDLVESKVGFGHLRCDLVGQRLLGLG* 408
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g1911 407 CDD pepsin_A_like_plant 32 396 IPR034161 -
Apr4g1911 407 PANTHER ASPARTYL PROTEASE-RELATED 2 404 IPR001461 GO:0004190|GO:0006508
Apr4g1911 407 Pfam Xylanase inhibitor N-terminal 33 198 IPR032861 -
Apr4g1911 407 Gene3D Acid Proteases 201 398 IPR021109 -
Apr4g1911 407 ProSiteProfiles Peptidase family A1 domain profile. 31 392 IPR033121 -
Apr4g1911 407 SUPERFAMILY Acid proteases 32 397 IPR021109 -
Apr4g1911 407 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 46 57 IPR001969 GO:0004190|GO:0006508
Apr4g1911 407 PANTHER ASPARTIC PROTEINASE PCS1 2 404 - -
Apr4g1911 407 Gene3D Acid Proteases 26 197 IPR021109 -
Apr4g1911 407 Pfam Xylanase inhibitor C-terminal 226 392 IPR032799 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g1911 Apr-Chr4 27101678 27102901 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g1911 33 397 Miscellaneous Gene Families AT1G77480 23.393 1.30e-13 70.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g1911 - - gmx:100813686 691.034
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr4g1911 4 27101678 27102901 Apr4g1911 4 27101678 27102901 ECH
Apr4g1911 4 27101678 27102901 Apr2g2313 2 28061724 28064419 ECH
Apr4g1911 4 27101678 27102901 Apr3g0205 3 3749553 3751297 ECH