Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g1898 ATGGCTGCCATTGTTCTGCTCCACATTGCATCATTGGCCTCTCTTTTTGCTGCAATAAGTGCTCGAATCCCTGGAGTTTACAACGGTGGCCCCTGGCAGAGTGCTCACGCCACTTTCTATGGTGGTGGTGCATGTGGGTACGGGAACTTATACAGCCAAGGATACGGGGTGAACACTGCAGCACTAAGCACAGCACTATTCAACAACGGTTTGAGCTGTGGTGCATGCTTTGAGTTAAAGTGTGACCAAGATCCACGTTGGTGCAACCCTGGGAACCCTTCGATCTTGATCACTGCCACAAATTTTTGTCCACCAAACTTTGCTCTTCCAAGTGACAATGGTGGGTGGTGCAACCCTCCTCGACCACACTTTGACCTCGCCATGCCAATGTTCCTCAAGATCGCTCAGTACCGAGCTGGAATTGTCCCCGTCGCTTACCGCCGGGTGCCATGCAGAAAGACAGGAGGCATCAGATTCACAATCAACGGTTTTCGTTACTTCAACCTGGTGCTGATCACCAACGTCGCGGGTGCAGGAGATATCGTGCGCGTGAGTGTGAAAGGAAGCAAAACTGCGTGGATGAGCATGAGCCGCAACTGGGGGCAAAATTGGCAATCCAACGCCGTTTTGGTGGGCCAGGCTCTCTCCTTTAGGGTCACCGGCAGTGACCGACGCACCTCAACCTCATGGAACGTGGCACCACCTAATTGGCAGTTCGGACAAACCTTCGTGGGAAAGAATTTCCGTGTCTAA 753 0.5246 MAAIVLLHIASLASLFAAISARIPGVYNGGPWQSAHATFYGGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFELKCDQDPRWCNPGNPSILITATNFCPPNFALPSDNGGWCNPPRPHFDLAMPMFLKIAQYRAGIVPVAYRRVPCRKTGGIRFTINGFRYFNLVLITNVAGAGDIVRVSVKGSKTAWMSMSRNWGQNWQSNAVLVGQALSFRVTGSDRRTSTSWNVAPPNWQFGQTFVGKNFRV* 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g1898 250 Gene3D - 156 248 IPR036749 -
Apr4g1898 250 PANTHER EXPANSIN-A15 3 249 IPR002963 GO:0009664
Apr4g1898 250 PRINTS Expansin/Lol pI family signature 41 59 IPR007118 GO:0005576
Apr4g1898 250 PRINTS Expansin/Lol pI family signature 63 81 IPR007118 GO:0005576
Apr4g1898 250 PRINTS Expansin/Lol pI family signature 139 155 IPR007118 GO:0005576
Apr4g1898 250 PRINTS Expansin/Lol pI family signature 193 207 IPR007118 GO:0005576
Apr4g1898 250 PRINTS Expansin/Lol pI family signature 231 245 IPR007118 GO:0005576
Apr4g1898 250 Pfam Lytic transglycolase 59 146 IPR009009 -
Apr4g1898 250 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 42 156 IPR007112 -
Apr4g1898 250 SUPERFAMILY PHL pollen allergen 153 244 IPR036749 -
Apr4g1898 250 Pfam Expansin C-terminal domain 157 234 IPR007117 -
Apr4g1898 250 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 166 245 IPR007117 -
Apr4g1898 250 PRINTS Expansin signature 54 68 IPR002963 GO:0009664
Apr4g1898 250 PRINTS Expansin signature 81 92 IPR002963 GO:0009664
Apr4g1898 250 PRINTS Expansin signature 95 105 IPR002963 GO:0009664
Apr4g1898 250 PRINTS Expansin signature 114 131 IPR002963 GO:0009664
Apr4g1898 250 PRINTS Expansin signature 131 144 IPR002963 GO:0009664
Apr4g1898 250 PRINTS Expansin signature 155 167 IPR002963 GO:0009664
Apr4g1898 250 PRINTS Expansin signature 167 188 IPR002963 GO:0009664
Apr4g1898 250 PRINTS Expansin signature 202 223 IPR002963 GO:0009664
Apr4g1898 250 PRINTS Expansin signature 231 247 IPR002963 GO:0009664
Apr4g1898 250 PANTHER EXPANSIN 3 249 - -
Apr4g1898 250 Gene3D - 19 152 IPR036908 -
Apr4g1898 250 SUPERFAMILY Barwin-like endoglucanases 31 174 IPR036908 -
Apr4g1898 250 SMART dpbb_1 59 146 IPR007112 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g1898 Apr-Chr4 26805047 26808522 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g1898 3 250 Expansin Gene Family AT2G39700 81.641 3.13e-155 430
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g1898 - - gmx:547955 496.123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr4g1898 4 26805047 26808522 Apr9g1341 9 23009635 23011717 ECH
Apr4g1898 4 26805047 26808522 Apr10g2025 10 33087615 33089347 ECH
Apr4g1898 4 26805047 26808522 Apr4g1898 4 26805047 26808522 ECH
Apr4g1898 4 26805047 26808522 Apr2g2300 2 27978586 27980438 ECH
Apr4g1898 4 26805047 26808522 Apr3g0192 3 3625771 3627704 ECH