Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g1896 ATGCTATGCTATGTCATGTTATGTGCTGCACTGCACCGCACCTCACCTCGGTTTTCACTTCCTCTCTGCTTTCTGCTTAAAGCACAACCCACCACTTCAACTTCTGTGTGTTTCTGTGCTCTTCTTTCAAGCCACTATACTCACCAAGGTCATCGTTTTTTTCTTCTTCCTTTCTCCTTTTCACCGTCTCGCTGCAACATTTGGGCTTCGTGGGGTGCTATCTTGTGTGAAAAAAGATCCTTGCGTTCACCCGCTAGGAGTTTTGTGCAGAGAAATCATGAAGATTTCAAGTTTCAAGCAACTGACTGGGATTTGCACTTGGAAATGAAGGATAGGCAACGGTGGAGAGCCGAAGAGGATGCATTACTACGCGCTTATGTCAAACAGTATGGTCCTAGGGAATGGAATCTTGTGTCTCAGCGCATGAACACACCTCTTAATAGGGATGCTAAGTCATGCTTAGAACGGTGGAAGAACTACCTCAAGCCTGGAATTAAGAAAGGTTCTCTTACTGAGGAAGAACAGCGCCTTGTGATCAATCTTCAAGCAAAGCACGGTAACAAGTGGAAGAAAATAGCTGCACAAGTGCCTGGTCGAACTGCTAAGAGGTTAGGAAAGTGGTGGGAAGTATTCAAAGAGAAGCAACAAAGAGAAACAAAGGGGGTAAATCGAATTATTGACCCCATTAACGATAGCAAATACGAGCATATACTAGAGAGTTTTGCAGAAAAACTAGTGAAAGAAAGGCCCTCACCATCATTCGCTATGGCTGCTTCAAACAGTTCTTTTCTGCATGCTGATGCATTGGCCCCTGCGCCGGCTCTGCTTCCGTCGTGGCTTTCCAATTCTAATAACACAGCCCCTGTGAGGCCGCCATCTCCATCCGTGACGCTAAGCCTTTCTCCCTCGACGGTGGCAGCGCCTCCTCCATGGTTGCAGCCCGTGAGAGGACCGGAGAATGCTGCTCCTCTTGTTCTTGGGAACGTGACTCCTCATGGGGCTGTTCTAGCTTTTGGTGAAAACATGGTTATGTCTGAGCTGGTGGAATGCTGTAAAGAGTTGGAAGAAATGCACCATGCATTGTTGGCGCATAAGAAGGAGGCGGCATGGCGGTTAAGCAGGGTGGAGTTGCAGTTGGAGTCGGAGAAGGCCGGGCGAAGGAGAGAAAAGATTGAAGAAATTGAAGCAAAGATGAAAGCTTTGAGGGAGGAGCAAACAGCTGCATTGGATAGAATTGAAGCAGAATACAGGGAACAGTTAGCAGGGTTGAGAAGAGATGCAGAGAGCAAGGAGCAGAAGTTAGCTGAACAATGGGCTGCAAAGCACTTGCGCCTTACCAAGTTTCTAGAGCAGGTAGGGTGCAGATCAAGGGTCACTGAACCGAATGGAAGATAG 1395 0.476 MLCYVMLCAALHRTSPRFSLPLCFLLKAQPTTSTSVCFCALLSSHYTHQGHRFFLLPFSFSPSRCNIWASWGAILCEKRSLRSPARSFVQRNHEDFKFQATDWDLHLEMKDRQRWRAEEDALLRAYVKQYGPREWNLVSQRMNTPLNRDAKSCLERWKNYLKPGIKKGSLTEEEQRLVINLQAKHGNKWKKIAAQVPGRTAKRLGKWWEVFKEKQQRETKGVNRIIDPINDSKYEHILESFAEKLVKERPSPSFAMAASNSSFLHADALAPAPALLPSWLSNSNNTAPVRPPSPSVTLSLSPSTVAAPPPWLQPVRGPENAAPLVLGNVTPHGAVLAFGENMVMSELVECCKELEEMHHALLAHKKEAAWRLSRVELQLESEKAGRRREKIEEIEAKMKALREEQTAALDRIEAEYREQLAGLRRDAESKEQKLAEQWAAKHLRLTKFLEQVGCRSRVTEPNGR* 465
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g1896 464 Gene3D - 112 166 - -
Apr4g1896 464 SMART sant 166 214 IPR001005 -
Apr4g1896 464 SMART sant 111 163 IPR001005 -
Apr4g1896 464 CDD SANT 171 212 IPR001005 -
Apr4g1896 464 CDD SANT 114 161 IPR001005 -
Apr4g1896 464 PANTHER TRANSCRIPTION FACTOR AS1 109 464 IPR031055 GO:0005634|GO:0006351|GO:0010338
Apr4g1896 464 Pfam Myb-like DNA-binding domain 115 176 - -
Apr4g1896 464 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 107 161 IPR017930 -
Apr4g1896 464 Coils Coil 384 433 - -
Apr4g1896 464 Gene3D - 170 230 - -
Apr4g1896 464 PANTHER PROTEIN ROUGH SHEATH 2 HOMOLOG 109 464 - -
Apr4g1896 464 ProSiteProfiles Myb-like domain profile. 107 161 IPR001005 -
Apr4g1896 464 ProSiteProfiles Myb-like domain profile. 162 212 IPR001005 -
Apr4g1896 464 SUPERFAMILY Homeodomain-like 112 206 IPR009057 -
Apr4g1896 464 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 162 216 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g1896 Apr-Chr4 26757086 26761096 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g1896 109 455 MYB Transcription Factor Family AT2G37630 66.575 1.28e-157 449
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Apr4g1896 Myb_DNA-bind_6 3.6e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g1896 K09422 - gmx:100819082 626.706
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr4g1896 4 26757086 26761096 Apr4g1896 4 26757086 26761096 ECH