Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g1893 ATGGCTGAGGAGAAATCAGAAGAGTGTTGTCAGGAGAATAAGCAATCCACTGCTGCTTCTTGCTCATCAGTATCTGAAGGCAGTGGCAGTGCAATTCACAAGTCTCCAGGGATATGTAGCCCTGCATCCACATCGCCTTCGCATCGTAGGACCACTGGCCCTATAAGGCGTGCTAAGGGTGGCTGGACGGCACAGGAGGATGAGACATTAAGGAATGCTGTTGCAGCTTATAAGGGAAAGAGTTGGAAGAAAATCGCTGAGTTTTTTCCTGATAGATCAGAAGTTCAGTGTCTTCACAGATGGCAAAAAGTTCTTAATCCTGATCTTGTTAAAGGACCTTGGACACAGAAGGAGGATGATCAAATTGTTGAGCTGGTGTCAAAATATGGGCCTACAAAATGGTCTTTGATAGCCAAGTCTTTACCTGGACGAATAGGCAAACAATGTCGAGAGCGGTGGCACAATCATCTTAATCCTGACATAAAGAAGGATGCCTGGACTTTGGAGGAGGAATTAGCCCTTATGAATGCTCATCGTATATATGGGAACAAATGGGCTGAAATAGCTAAGGTCCTTCCTGGAAGGACTGATAATGCAATAAAAAATCACTGGAATAGTTCTTTGAAGAAAAAGTTGGATTTTTATTTAACTACAGGAAGACTTCCACCAATTCCGAAGAACAATCCGCAAGTTTCTGTCAAAGATACAATTAGACGTTCTGCTTCTAAAACAATACTTGCTTGTTCAAATAAAGAATTAAATGCAGCTGTTGAAACATCATCTGAAACTACTGCCATTAGTAAGTTAGATGACAATGGCAGAAATCAGTTTGAGTCATCTGGAACAATTAGAGAAGTTGGTGATTCTTCAAGTGTTCCTGCAAATGAATCTGCTGATTCTGACTGTGTAGAATGCAAGCCTGGATCATCCAACATTGATCTTAGCTGTAGCAACTCAGAACAAGTGTCCAGAGCTAATTTTGGAATAACTTATGGGCCAATATCTGAGAATTCTAGACCCAATGGAAACTCAACCTTTGAGCATTGTACAACTAATGGTGAAATGAGCAGTACCAGGTTAATCAGAACATCTTCACAAGAAAGTCCAACCTGTGGTTCTTTGTGTTATGAGCCACCACAGTTAGATGGTTCAGTTCCTTTAGATTCTCTCTATTTAAATTTTGTTTGCCAGCAGAATGAGTACTGTTTGAACCCAATGTTGTCACCTATTGGTTTCTTGACTCCACCTCGAGTCCAGAGTAGTGATTCGTACACAGAGACACCTGAATCAATATTGAAAAAGGCAGCTTATACTTTTCCAAATACTCCTTCCATATTGAGGAGGAGAAAAAGTGCAGTCCAATCACTCACCTGTCCTAGTAAAGTCTTGAAAGTGGATGATGATCCACGCACCTCGAATGAATCAGAGAGAAACAAGGATGATTCTGGTTCTGGCAGGTTCTCTGAGACCCCCGCAAGGCATGCCAATGGGAGTGCCATTCTGAATAATAGGGCATTCGATGCATCCCCGCCATACAGGTTAAGATCCAAGCGAACAGCAGTTGTCAAGTCTGTGGAGAAACAACTTGACTTTGAATTTGACAAAGAAAAGAATATTGACAAGAGGAGCAACGCGATGACCAAAGATCATCTGCATGAGACAAAACTTGGTGTGACATAG 1680 0.4179 MAEEKSEECCQENKQSTAASCSSVSEGSGSAIHKSPGICSPASTSPSHRRTTGPIRRAKGGWTAQEDETLRNAVAAYKGKSWKKIAEFFPDRSEVQCLHRWQKVLNPDLVKGPWTQKEDDQIVELVSKYGPTKWSLIAKSLPGRIGKQCRERWHNHLNPDIKKDAWTLEEELALMNAHRIYGNKWAEIAKVLPGRTDNAIKNHWNSSLKKKLDFYLTTGRLPPIPKNNPQVSVKDTIRRSASKTILACSNKELNAAVETSSETTAISKLDDNGRNQFESSGTIREVGDSSSVPANESADSDCVECKPGSSNIDLSCSNSEQVSRANFGITYGPISENSRPNGNSTFEHCTTNGEMSSTRLIRTSSQESPTCGSLCYEPPQLDGSVPLDSLYLNFVCQQNEYCLNPMLSPIGFLTPPRVQSSDSYTETPESILKKAAYTFPNTPSILRRRKSAVQSLTCPSKVLKVDDDPRTSNESERNKDDSGSGRFSETPARHANGSAILNNRAFDASPPYRLRSKRTAVVKSVEKQLDFEFDKEKNIDKRSNAMTKDHLHETKLGVT* 560
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g1893 559 Gene3D - 165 239 - -
Apr4g1893 559 MobiDBLite consensus disorder prediction 269 297 - -
Apr4g1893 559 MobiDBLite consensus disorder prediction 37 51 - -
Apr4g1893 559 MobiDBLite consensus disorder prediction 463 487 - -
Apr4g1893 559 MobiDBLite consensus disorder prediction 461 504 - -
Apr4g1893 559 ProSiteProfiles Myb-like domain profile. 54 105 IPR001005 -
Apr4g1893 559 CDD SANT 113 157 IPR001005 -
Apr4g1893 559 ProSiteProfiles Myb-like domain profile. 106 157 IPR001005 -
Apr4g1893 559 SUPERFAMILY Homeodomain-like 59 119 IPR009057 -
Apr4g1893 559 SMART sant 110 159 IPR001005 -
Apr4g1893 559 SMART sant 162 210 IPR001005 -
Apr4g1893 559 SMART sant 58 107 IPR001005 -
Apr4g1893 559 ProSiteProfiles Myb-like domain profile. 158 208 IPR001005 -
Apr4g1893 559 Pfam Myb-like DNA-binding domain 111 157 IPR001005 -
Apr4g1893 559 Pfam Myb-like DNA-binding domain 59 105 IPR001005 -
Apr4g1893 559 Pfam Myb-like DNA-binding domain 163 206 IPR001005 -
Apr4g1893 559 PANTHER MYB-RELATED PROTEIN B-LIKE 18 313 - -
Apr4g1893 559 PANTHER MYB-RELATED PROTEIN B-LIKE 367 482 - -
Apr4g1893 559 CDD SANT 165 208 IPR001005 -
Apr4g1893 559 Gene3D - 58 110 - -
Apr4g1893 559 MobiDBLite consensus disorder prediction 269 300 - -
Apr4g1893 559 MobiDBLite consensus disorder prediction 332 355 - -
Apr4g1893 559 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 59 105 IPR017930 -
Apr4g1893 559 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 162 212 IPR017930 -
Apr4g1893 559 MobiDBLite consensus disorder prediction 1 64 - -
Apr4g1893 559 MobiDBLite consensus disorder prediction 12 30 - -
Apr4g1893 559 CDD SANT 62 105 IPR001005 -
Apr4g1893 559 Gene3D - 111 162 - -
Apr4g1893 559 SUPERFAMILY Homeodomain-like 108 204 IPR009057 -
Apr4g1893 559 PANTHER MYB PROTEIN-RELATED 367 482 - -
Apr4g1893 559 PANTHER MYB PROTEIN-RELATED 18 313 - -
Apr4g1893 559 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 106 161 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g1893 Apr-Chr4 26643763 26650570 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g1893 2 551 MYB Transcription Factor Family AT3G09370 46.619 5.49e-154 449
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Apr4g1893 Myb_DNA-binding 3.2e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g1893 K09422 - gmx:778081 974.156
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr4g1893 4 26643763 26650570 Apr4g1893 4 26643763 26650570 ECH