Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Apr4g1883 | ATGTCTCCACCAGGTTCATCAAGATGGAGCCCTACCACAGAACAGCTAATGATCTTAGAGGAACTGTATAGGAGTGGGATTAGAACTCCTAGTGCCTCTCAAATTCAGCAAATAACGACTCACCTTTCTTTCTATGGAAGGATAGAAGGAAAGAATGTGTTCTATTGGTTTCAGAACCATAAGGCTAGGGATAGACAAAAGCTCAGGAGGAAACTCAACAAGCAGCTGCAGCTACAGCAGCAGCAGCAGCAACAACAACAACAACTCCAAGTTCATCATCATTTCCAACTGAATCAGGATATCACTAACCATTTTGTTGGTACCTTTGGTTATCCTCCTTGTTCTCCTACCCAAGATTTTTCCTTTTATAACTCAGCTACCTTGCTTTTTCAGGGAGGAGCTGCAAACACAACAGAAGAAGCATTGAATTGCAAGTGGAATGTGTATAATCCTCAAAGCAATTTGGTAGAGAAGAAAGAGATGACATTGTGCAATTATGGTTGGACACTTGTGGATGTTAACCAAGCATCTTCATGTTGCACTCGACCTCTCAAGACTCTTGATCTCTTTCCACTGACAACTACAAGAATCAAAGAAGACTGCAACACATCCAAGCAACTCTAA | 624 | 0.4151 | MSPPGSSRWSPTTEQLMILEELYRSGIRTPSASQIQQITTHLSFYGRIEGKNVFYWFQNHKARDRQKLRRKLNKQLQLQQQQQQQQQQLQVHHHFQLNQDITNHFVGTFGYPPCSPTQDFSFYNSATLLFQGGAANTTEEALNCKWNVYNPQSNLVEKKEMTLCNYGWTLVDVNQASSCCTRPLKTLDLFPLTTTRIKEDCNTSKQL* | 208 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Apr4g1883 | 207 | Coils | Coil | 65 | 89 | - | - | |
| Apr4g1883 | 207 | Pfam | Homeodomain | 7 | 66 | IPR001356 | GO:0003677 | |
| Apr4g1883 | 207 | Gene3D | - | 2 | 67 | - | - | |
| Apr4g1883 | 207 | PANTHER | WUSCHEL-RELATED HOMEOBOX 1-RELATED | 1 | 204 | IPR044555 | GO:0003700|GO:0099402 | |
| Apr4g1883 | 207 | SUPERFAMILY | Homeodomain-like | 7 | 67 | IPR009057 | - | |
| Apr4g1883 | 207 | CDD | homeodomain | 8 | 67 | IPR001356 | GO:0003677 | |
| Apr4g1883 | 207 | ProSiteProfiles | 'Homeobox' domain profile. | 2 | 67 | IPR001356 | GO:0003677 | |
| Apr4g1883 | 207 | SMART | HOX_1 | 4 | 71 | IPR001356 | GO:0003677 | |
| Apr4g1883 | 207 | PANTHER | WUSCHEL-RELATED HOMEOBOX 3 | 1 | 204 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Apr4g1883 | Apr-Chr4 | 26545021 | 26545934 | Dispersed/Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Apr4g1883 | 1 | 85 | Wox Gene Family | AT2G28610 | 80.000 | 7.17e-38 | 129 |
Transcription factors information
| Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
|---|---|---|---|---|---|---|---|
| TF | HB-WOX | Apr4g1883 | Homeodomain | 6.7e-18 | CL0123 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Apr4g1883 | - | - | gmx:102663963 | 297.36 |