Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g1873 ATGTCGTCGATGGCGGAAAGCGAGGATTCACGGATGCTTCAGAAGCTGAGCCGCATCGCCACCCAAATCTCCGAAATCCCTTCCTTCAAGACCGTCATCAAGAGGCGATGCTGGGACCTCACTCGCAGAATAAGGTTCCTCACACCTCTCTTTCAAGAACTACAGAACGACGTCGTTTTGAGCCACGACGTTTACGACGCTCTTGATTCGCTCCATGAAGCTCTCCTCAAGGCCAAGGAATTGCTCCATTTCGCTTCCCAAGGAAGCCAGCTTTTCATGATACTGGAGAGAGAGCAAATTAAGTGCAAATTCACTGATGTTGCTGTTCGTTTTGAACGTGGAATAAGCAAGATTTCCTTTGACGAACTTGATATTTCTGAAGAAGTTAAGGAACAGGTTGCGCTTGTGACTGCGCAGTTTAGAAGAGCCAAAGAGAAGTTTGATCCACCAGGTCTTGAGCTTTATGAGCACTTGTTGCCCGTTTTCAACCAGAGCTATGATGTGAATACTGAAACTGCTGAACTATGTTTAATCTGTGAAAAGCTACAATTTACCCATGTGGATGACATCAAACAAGAGTCACTCGCTCTACAGAAGATGGTAGTAGACAGGGGTTTCCCTTTTGAGAAAAGCATACACGATATGTCTATAGTGCTGAAAAAATTTGAAGAATTCTTGGTGATGAAATCTGGAAACAATGTTGTGTCAACAAGTGAGGATTTCCCTCATACTGATGAGCCATATGTGAAACTATGTCCGCAATCACTGGTTGTACCTGATGAGTTTCAATGCCCAATATCTCTAGAGCTAATGAAAGATCCTGTTATCATTTGCACAGGGCAGACATATGAACGATCTTGCATAAAGAAATGGCTTGCAGCAGGGCATGAAACATGTCCCAAGACTAGGCAGATTCTTTCCAGCCGTGTCCTCATACCTAACCATGTTTTATACAGTCTGATATCAAATTGGTGTGAGGCTAATGGAGTGGAATCACCTAAAAGATTAGGAAGTTTACGACTTTGTAAGACAGCATCTGATGGATCTTCTGAGTTAATAGATCTTGATATCTTGATGAACAAACTTGCTTCTAATGATATTGACAATCAGCGATTGGCAGCAGGGGAGCTGCGACTTCTTGCCAAGAACAATGGTCAAAATCGAATGCTGATTGCTAAAGCTGGTGCTATACCCCTCCTTGTTGATCTCCTTTATGTACCTGATGCTGGCACCCAAGAGCATGCAGTCACTGCTCTACTGAACTTGTCTATCTATGAGGATAATAAAGCATGCATCATGGCCTCAGAGGCTGTGCCAGGTATCCTTCATGTGCTAGAAAATGGTAGTATGGAAGCTCGGGAGAACGCAGCAGCCACCTTTTTCAGTCTCTCTGTGGTGGAGGAGAACAAAATGGTAATTGGTGCATCTGGAGCAATCCAGGCATTAGTTACTCTATTTTGCAAGGGAAGCCAAAGAGGGAAAGTGGATGCCGCAACAGCACTTTTCAGCCTGTGTTTATATCAAGGGAACAAAGGACGAGCAATTAGAGCCGGTATTGTTCCCAAGTTGATAGAAATGCTAACTAAACCTGGTGGGGAGATGAGAGATGAAGCATTGGCAATCATGGCTGTAGTAGTTAACCATCCGGATGGAAAAGCAGAAATTGGATCTATGAATGTTGTGCCCACTTTGGTGGAGTTAATAGATAATGGATCTTCTAGGAATAAAGAGAATGCAGCTTCAGTGTTAGTGCACCTCTGCAGTGCCGATCCTCTACATCTATCAATTGTTAGTTCACTTGGGTTGATCAATCCTCTCTTGGACCTGGCAGAAAATGGTTCAGAAAGGGGCAAGCGAAAAGCTGCCCAACTTCTAGGCTTGATAGGAGACCATTGTGAATACACTAGGAAACTGTCAACTAGATTTTAG 1929 0.4375 MSSMAESEDSRMLQKLSRIATQISEIPSFKTVIKRRCWDLTRRIRFLTPLFQELQNDVVLSHDVYDALDSLHEALLKAKELLHFASQGSQLFMILEREQIKCKFTDVAVRFERGISKISFDELDISEEVKEQVALVTAQFRRAKEKFDPPGLELYEHLLPVFNQSYDVNTETAELCLICEKLQFTHVDDIKQESLALQKMVVDRGFPFEKSIHDMSIVLKKFEEFLVMKSGNNVVSTSEDFPHTDEPYVKLCPQSLVVPDEFQCPISLELMKDPVIICTGQTYERSCIKKWLAAGHETCPKTRQILSSRVLIPNHVLYSLISNWCEANGVESPKRLGSLRLCKTASDGSSELIDLDILMNKLASNDIDNQRLAAGELRLLAKNNGQNRMLIAKAGAIPLLVDLLYVPDAGTQEHAVTALLNLSIYEDNKACIMASEAVPGILHVLENGSMEARENAAATFFSLSVVEENKMVIGASGAIQALVTLFCKGSQRGKVDAATALFSLCLYQGNKGRAIRAGIVPKLIEMLTKPGGEMRDEALAIMAVVVNHPDGKAEIGSMNVVPTLVELIDNGSSRNKENAASVLVHLCSADPLHLSIVSSLGLINPLLDLAENGSERGKRKAAQLLGLIGDHCEYTRKLSTRF* 643
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g1873 642 CDD RING-Ubox_PUB 262 304 IPR045210 -
Apr4g1873 642 Gene3D - 497 639 IPR011989 -
Apr4g1873 642 ProSiteProfiles U-box domain profile. 257 331 IPR003613 GO:0004842|GO:0016567
Apr4g1873 642 Gene3D - 11 121 IPR036537 GO:0007166
Apr4g1873 642 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 10 628 - -
Apr4g1873 642 Coils Coil 126 146 - -
Apr4g1873 642 Pfam U-box domain 258 328 IPR003613 GO:0004842|GO:0016567
Apr4g1873 642 SMART Ubox_2 261 324 IPR003613 GO:0004842|GO:0016567
Apr4g1873 642 Pfam Armadillo/beta-catenin-like repeat 549 588 IPR000225 GO:0005515
Apr4g1873 642 Pfam Armadillo/beta-catenin-like repeat 386 423 IPR000225 GO:0005515
Apr4g1873 642 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 258 332 IPR013083 -
Apr4g1873 642 SUPERFAMILY RING/U-box 258 333 - -
Apr4g1873 642 Gene3D - 339 494 IPR011989 -
Apr4g1873 642 SUPERFAMILY ARM repeat 354 629 IPR016024 -
Apr4g1873 642 SMART arm_5 466 506 IPR000225 GO:0005515
Apr4g1873 642 SMART arm_5 383 424 IPR000225 GO:0005515
Apr4g1873 642 SMART arm_5 425 465 IPR000225 GO:0005515
Apr4g1873 642 SMART arm_5 590 630 IPR000225 GO:0005515
Apr4g1873 642 SMART arm_5 548 588 IPR000225 GO:0005515
Apr4g1873 642 PANTHER U BOX DOMAIN-CONTAINING 10 628 - -
Apr4g1873 642 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 395 437 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g1873 Apr-Chr4 26274692 26282327 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g1873 6 637 U-box Gene Family AT3G46510 50.940 0.0 641
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g1873 - - var:108326899 864.374