Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g1870 ATGGAGTGTGAAGTTGAACTGCAAGGGGGAGATCTACATGCAGGGGTGGTAACTGAAACAAACCATGTTGGTTTTGGCACCATGGAAGATGCAGAGACTTTAGCAGTTGCAGAGAGAGATATATGGCTAAACAGTGACCAAGATGAATTCCTAGGTGTCAATGATGCCTCCATGTTCTACGCTGACTTCCCTCCTTTACCTGATTTCCCTTGCATGTCGTCGTCATCATCATCTTCTTCAGCTCCAGCACTTCCTGTGAAGACCATGACATGTTCCACCACCACCACCACCACCACATCTTCTTCCTCCTCCGCTTCGTCCTCCTCGGCGGCTTCGTGGGCGGTTTTGAAGTCAGAGGCCGAGGAAGAAGCGGAGAAGAAGAGTTTTAATTACATGCAGCATCAGCATGATCAACTTGATGCAACTACCCCCGTCGCTTTGTCTTCTACTGCATCCATGGAGATTTCTCAACAGCACCACCCTGATCCTGGTCTTGGTGGCACTGTAGGAGAGTGCATGGATGATGTTATGGACACATTTGGGTACATGGAGCTCTTAGAAGCCAATGATTTCTTTGACCCTGCGTGTATTTTTCAGAATGAAGAGAACCCTTTGGTAGAATTTGCAACACTGCAGGAACATGTGCCAATGCAAGAGGAACAGCATGCAATGGTGCATCAGCATGGGGTGATAGAGGAAGAACAAGATCATGAAGTTCCTGTGTGTGAAGAGATCCATGAAGAGGAAGAAGGAGGTGGTGATGATGGTGGTGGTGGTGATGATGGTGGTGGTGGGGATGATGAAATGAGCACGGTGTTCTTGGAGTGGCTCAAGTCTAATAAAGATAGTGTTTCTGCAACTGACTTGAGGAGTGTGAAGCTCAAGAAGGCAACAATTGAAAGTGCGGCAAGGCGTTTGGGTGGAGGAAAAGAAGCTATGAAGCAGTTGCTGAAGTTGATTCTTGAATGGGTTCAAACCAGCCATCTGCAAAATAAAAGGCGCAAGGAGAATAATAGCATTGACAATGCATTGCCATCAAGTCTCCACTCACAGTTTCAGGATCCTAGTAGTCAGAACCAAAACACAAACACTGGTTCCAACATGAACCAAAACCCAAGTTCATTTGCACCTGAATCAAACGCTTGTTTCAATAATCAGACACCTTGGCTGTCTCCACAACCTTTTGGGACAGACCAAGCTCATCTCATGGTGCCTCCACCGCCATATCCACAACCCATGGTTGGGTATGTGGGTGACCCTTACTCAAATTGTGGGGGTGCTGCTTCAAATAACATCACTGGTACTCATAACCGCAACCCTTACCATCCTGGTACAGATCAGTATCACATGTTGGAAACAGCACATTCATGGCCTCATTCTCAGTTCAATGTTGGTTCTCACTATAGCCAATCATTTGGGGACAATAATCTTTTCCAACATGGTGCTTTTGGCGGCTATGGAAATAATCAGTACCCTTATCAGTTTTTTCATGGCCCTGGTGATAGGTTGATGAGATTAGGTCCTTCAGCTACCAAAGAAGCAAGGAAGAAGAGGATGGCAAGGCAGAGAAGGTTTTTGACTCATCAAAGGCATCATAATAATCACCCTCAGAATCATGGTCCTGACCCACATGTAAGATTGGGAAGTGATAATTGCACCACTGTTGTAGCTACGCCTCATGCAAATCCTGCAGCCAATTGGATGTACTGGCAAGCTATGGCTGGTGGTGGAGCGTCTTCGATGGCGCCCGCGGTTCCTGTTGAGCCACCGGCTGGGCAACAGGTGGTGGACCGGCAGGCCCTGCAGACACAGAATTGTCATCCGGGTCGAATCGCATCGGACAGGAGACAGGGTTGGAAGCCTGAGAAGAACTTGAGGTTTCTTCTGCAAAAGGTGTTGAAGCAAAGTGATGTGGGAAGTTTGGGGAGAATCGTGTTGCCAAAAAAAGAGGCAGAAACCCATTTGCCAGAACTGGAGGCAAGAGATGGAATTTCAATAACAATGGAAGACATTGGAACTTCTCGTGTTTGGAATATGCGCTATAGATACTGGCCAAACAACAAAAGTAGAATGTATTTGCTTGAGAACACTGGAGACTTTGTTAGAGCCAACGGACTCCAAGAGGGTGATTTCATAGTGATATATTCAGATGTGAAGTGTGGCAAATTTATGATAAGAGGAGTGAAAGTGAGGCAACAAGGTGTGAAATCAGATAGCAAGAAAGCAGGAAAATCGCAGAAAAACCAGCATGGGACTAATGCAGCAACTACAGCTGGTACAGCTGCAAATAATGGCACGCCATCGTCACCAAAGCCAAAAGCTGAAAAAGGAGTAAATTAA 2340 0.4632 MECEVELQGGDLHAGVVTETNHVGFGTMEDAETLAVAERDIWLNSDQDEFLGVNDASMFYADFPPLPDFPCMSSSSSSSSAPALPVKTMTCSTTTTTTTSSSSSASSSSAASWAVLKSEAEEEAEKKSFNYMQHQHDQLDATTPVALSSTASMEISQQHHPDPGLGGTVGECMDDVMDTFGYMELLEANDFFDPACIFQNEENPLVEFATLQEHVPMQEEQHAMVHQHGVIEEEQDHEVPVCEEIHEEEEGGGDDGGGGDDGGGGDDEMSTVFLEWLKSNKDSVSATDLRSVKLKKATIESAARRLGGGKEAMKQLLKLILEWVQTSHLQNKRRKENNSIDNALPSSLHSQFQDPSSQNQNTNTGSNMNQNPSSFAPESNACFNNQTPWLSPQPFGTDQAHLMVPPPPYPQPMVGYVGDPYSNCGGAASNNITGTHNRNPYHPGTDQYHMLETAHSWPHSQFNVGSHYSQSFGDNNLFQHGAFGGYGNNQYPYQFFHGPGDRLMRLGPSATKEARKKRMARQRRFLTHQRHHNNHPQNHGPDPHVRLGSDNCTTVVATPHANPAANWMYWQAMAGGGASSMAPAVPVEPPAGQQVVDRQALQTQNCHPGRIASDRRQGWKPEKNLRFLLQKVLKQSDVGSLGRIVLPKKEAETHLPELEARDGISITMEDIGTSRVWNMRYRYWPNNKSRMYLLENTGDFVRANGLQEGDFIVIYSDVKCGKFMIRGVKVRQQGVKSDSKKAGKSQKNQHGTNAATTAGTAANNGTPSSPKPKAEKGVN* 780
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g1870 779 MobiDBLite consensus disorder prediction 247 262 - -
Apr4g1870 779 CDD BfiI_C_EcoRII_N_B3 627 728 - -
Apr4g1870 779 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 25 774 - -
Apr4g1870 779 ProSiteProfiles B3 DNA-binding domain profile. 629 731 IPR003340 GO:0003677
Apr4g1870 779 MobiDBLite consensus disorder prediction 340 390 - -
Apr4g1870 779 Gene3D - 625 745 IPR015300 -
Apr4g1870 779 MobiDBLite consensus disorder prediction 330 390 - -
Apr4g1870 779 MobiDBLite consensus disorder prediction 734 779 - -
Apr4g1870 779 SUPERFAMILY DNA-binding pseudobarrel domain 628 724 IPR015300 -
Apr4g1870 779 Pfam B3 DNA binding domain 630 726 IPR003340 GO:0003677
Apr4g1870 779 SMART B3_2 629 729 IPR003340 GO:0003677
Apr4g1870 779 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 25 774 IPR044800 GO:0003700
Apr4g1870 779 MobiDBLite consensus disorder prediction 245 269 - -
Apr4g1870 779 MobiDBLite consensus disorder prediction 746 770 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g1870 Apr-Chr4 26191847 26194919 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g1870 39 776 B3 DNA Binding Superfamily AT3G24650 44.631 1.24e-155 468
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Apr4g1870 B3 3.6e-18 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g1870 - - gmx:100795226 1131.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr4g1870 4 26191847 26194919 Apr4g1870 4 26191847 26194919 ECH