Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g1869 ATGTCGAGGCAATATTTCATCACAAACCATCACCATCACCACCACCTTCTCTATGTTCTCTTGTTTACACTTCTTGTCCCTCTTTCCTTTGCTGCAAATGATGAAGTTAGTGCATTGGTTTCATGGATGCATGGCTCCTCCAAAGTTCCTTCTGCTTTTTCTAACTTGAACCCTTTGGACTCTACTCCTTGCAAATGGTCTTTCATCAAATGCTCTTCAGCAAGCCATGTCACTGAGATAAATATTCAAAATGTTGAGTTGGCACTTCCCTTTCCTTCCAAAATATCTTCCCTTCCCTTCCTTCAAAAGTTGGTCATTTCTGGGGCTAACCTCACTGGGGCTATCTCACTTGACATTGGGAACTGCCCTGAGCTTATAGTCCTTGATCTTAGCTCAAACAGTCTTGTGGGTGATATTCCTTCAAGTATTGGGAAGCTCAAAAAGCTCCAAAGCTTGAGCTTGAACTCTAACCAGCTCACTGGGCCAATTCCGAGTGAGCTTGGTGATTGTTTCAACCTCAAGACCCTTGATATCTTTGACAACAACCTTAGTGGGTATCTTCCTGTTGAGCTGGGAAAACTGTCTAATCTTGAGGTTATAAGAGCAGGAGGAAACAAAGGCATTGAGGGGAAGATTCCCGATGAGCTTGGAGAATGTAGGAATTTGACAGTGTTGGGTCTTGCTGACACTAAAATTTCAGGTTCATTACCTGCTTCACTGGGTAAGCTAAGCATGCTTCAGACTATGTCTGTTTATAGTACTATGCTTTCTGGTGACATTCCTCCTGAAATAGGCAACTGTTCAGAGCTTGTGAACTTGTTTCTCTACGAGAATGATCTTTCTGGTTCACTGCCAAGACAGATAGGTAAACTTGAGAAGCTGGAAAAGATGCTGCTTTGGCAAAACAATTTTGTTGGGAGCATACCTGAGGAAATTGGCAACTGTAGAAGCTTGAAGATTCTTGATGTGTCCTTGAATTCTTTATCTGGTACAATACCTCAAAGTTTGGGACAACTCTTAAATCTTGAAGAGCTTATGCTGAGTAACAATAACATTTCTGGTTCAATACCACCAGCTCTTTCAAATCTCACAAATCTTGTACAGTTGCAGTTGGATACAAATCAACTATCAGGTTCAATTCCACCTGACCTTGGAAGGTTGGCAAAGCTGACAGTCTTTTTTGCTTGGCAGAACAAACTTGAAGGTGGCATTCCATCAGAATTGGGAGGTTGTAGAAGCCTTGAGGCTTTGGATTTGTCATATAATGCACTTACTGATAGCTTACCTCCAGGCCTGTTCAAGCTTCAAAATTTAACAAAGCTTTTGCTAATCTCTAATGATATTTCTGGTCCCATCCCTCCTCAGATTGGTAACTGCACTTCTCTCATTCGGCTCCGGCTTGTCGACAACAGAATCAGTGGGGAGATACCAAGAGAAATCGGCTTCCTAAACAATCTCAGTTTCCTTGATCTGTCTGAAAACCATCTCACTGGGTCAGTGCCACTTGAAATTGGAAACTGTAAAGAACTGCAAATGCTTAATCTTAGCAATAACTCCCTTTCTGGTGCTTTGCCTAGTTATTTGTCTTCCCTCACAAGGCTAGAGGTGTTGGATGTTTCTCTGAATAACTTTTCTGGTGAGATTCCAATGAGTATAGGTCAACTCACTTCACTTCTTAGAGTCATCCTAAGCAAAAACTCTTTCTCAGGACCAATTCCCTCCTCACTTGGCCAATGTTCAGGTCTTCAACTGCTAGACCTTAGCAGCAACAAGTTCTCAGGGAGCATCCCACCAGAACTACTCCAAATTGAAGCACTTGATATTGCTTTAAATCTGAGTCACAATGCATTATCTGGAGTAATCCCACCAGAGATTTCTTCTCTGACCAAGCTATCAGTTCTAGATCTTTCACACAATAATCTTGAAGGTGACTTGATGGCATTTTCAGGGCTTGAAAATCTTGTTTCTCTAAACATTTCCTACAACAAATTCACTGGCTATCTACCAGACAGCAAGTTGTTCCACCAACTATCAGTAACAGATTTGGCTGGAAACCAAGGTTTGTGTCCTAATGGTCATGATTCATGTTTTGTTAGCAATGCTGCAATGACAAAAATGCTGAATGGCACTAATTCTAAGAGGTCTGAGATAATCAAAGTCGCCATTGGATTGCTCAGTGCCTTTACTGTTGCAATGACAATCTTTGGAGTTGTTACCGTCTTTCGAGCAAGGAAAATGATTCAAGCTGACAATGATTCTGAGATGGGAGGGGATTCAATGCCTTGGCAATTCACTCCATTTCAAAAGTTAAATTTCACTGTGGAGCAAGTTCTAAAGTGTTTGGTGGAATCCAATGTAATAGGAAAAGGGTGTTCAGGGATTGTTTATCGCGCCCAAATGGAAAATGGGGATGTCATTGCTGTGAAAAGGCTATGGCCAACAACAATGGCTGCAAGATATGATAGCCAAAATGACAAGTTAGAAGTTAATGGAGGGGTTCGTGATTCCTTTTCAGCTGAAGTAAAAACTCTTGGTTCAATTCGCCACAAGAACATTGTGAGGTTCTTAGGTTGCTGTTGGAACAGAAACACAAGATTGCTTATGTATGATTACATGCCAAATGGGAGTCTTGGAAGTCTACTTCATGAAAGAAGTGGAAACTGCTTGGAATGGGACATCAGATTCCGGATTATACTAGGATCAGCTCAAGGTTTGGCTTATTTGCACCATGACTGTGCTCCTCCTATTGTTCATAGGGACATTAAAGCCAACAACATCCTCATAGGCCCTGAATTTGAACCATATATAGCTGATTTTGGGCTTGCAAAGCTTGTTGATGATGGAGATTTTGCTCGATCTTCTAGTACACTTGCTGGTTCATATGGTTACATAGCTCCTGAGTATGGATACATGATGAAAATAACAGAGAAGAGTGATGTCTATAGCTATGGAATTGTTGTATTAGAAGTACTAACAGGGAAGCAACCAATTGATCCAACAATACCTGACGGACTCCACATTGTAGACTGGGTAAGACACAAAAGAGGGAGAGTTGATGTGCTTGATGAAAGCTTGCGAGCTAGGCCAGAACCAGAAATTGATGAAATGTTGCAAACCTTAGGTGTGGCTTTGCTGTGTGTGAACTCAAGCCCAGATGACAGGCCAACCATGAAAGATGTTGTAGCAATGATGAAAGAAATTAGGATGGAGAGAGAGGAATGTGTGAAAGTTGACATGCTTCTTGATGCATCATCTGCAAATGATCAACAAGAAAGGAATCTTCCCAATGAAGAACCAATGAGAGTGTTGAAACATGTTAGCCCAACAAGCTCTAGCAACACAAATCTGCATCTCCATCACTCCCCATCATCCACAAAGACCAGAGTAACTTTCAAGTAG 3399 0.4148 MSRQYFITNHHHHHHLLYVLLFTLLVPLSFAANDEVSALVSWMHGSSKVPSAFSNLNPLDSTPCKWSFIKCSSASHVTEINIQNVELALPFPSKISSLPFLQKLVISGANLTGAISLDIGNCPELIVLDLSSNSLVGDIPSSIGKLKKLQSLSLNSNQLTGPIPSELGDCFNLKTLDIFDNNLSGYLPVELGKLSNLEVIRAGGNKGIEGKIPDELGECRNLTVLGLADTKISGSLPASLGKLSMLQTMSVYSTMLSGDIPPEIGNCSELVNLFLYENDLSGSLPRQIGKLEKLEKMLLWQNNFVGSIPEEIGNCRSLKILDVSLNSLSGTIPQSLGQLLNLEELMLSNNNISGSIPPALSNLTNLVQLQLDTNQLSGSIPPDLGRLAKLTVFFAWQNKLEGGIPSELGGCRSLEALDLSYNALTDSLPPGLFKLQNLTKLLLISNDISGPIPPQIGNCTSLIRLRLVDNRISGEIPREIGFLNNLSFLDLSENHLTGSVPLEIGNCKELQMLNLSNNSLSGALPSYLSSLTRLEVLDVSLNNFSGEIPMSIGQLTSLLRVILSKNSFSGPIPSSLGQCSGLQLLDLSSNKFSGSIPPELLQIEALDIALNLSHNALSGVIPPEISSLTKLSVLDLSHNNLEGDLMAFSGLENLVSLNISYNKFTGYLPDSKLFHQLSVTDLAGNQGLCPNGHDSCFVSNAAMTKMLNGTNSKRSEIIKVAIGLLSAFTVAMTIFGVVTVFRARKMIQADNDSEMGGDSMPWQFTPFQKLNFTVEQVLKCLVESNVIGKGCSGIVYRAQMENGDVIAVKRLWPTTMAARYDSQNDKLEVNGGVRDSFSAEVKTLGSIRHKNIVRFLGCCWNRNTRLLMYDYMPNGSLGSLLHERSGNCLEWDIRFRIILGSAQGLAYLHHDCAPPIVHRDIKANNILIGPEFEPYIADFGLAKLVDDGDFARSSSTLAGSYGYIAPEYGYMMKITEKSDVYSYGIVVLEVLTGKQPIDPTIPDGLHIVDWVRHKRGRVDVLDESLRARPEPEIDEMLQTLGVALLCVNSSPDDRPTMKDVVAMMKEIRMEREECVKVDMLLDASSANDQQERNLPNEEPMRVLKHVSPTSSSNTNLHLHHSPSSTKTRVTFK* 1133
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g1869 1132 MobiDBLite consensus disorder prediction 1106 1132 - -
Apr4g1869 1132 Gene3D Ribonuclease Inhibitor 525 608 IPR032675 -
Apr4g1869 1132 Pfam Leucine Rich repeats (2 copies) 123 161 IPR025875 -
Apr4g1869 1132 Gene3D Phosphorylase Kinase; domain 1 766 871 - -
Apr4g1869 1132 ProSiteProfiles Leucine-rich repeat profile. 630 652 IPR001611 GO:0005515
Apr4g1869 1132 SMART serkin_6 781 1064 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr4g1869 1132 SUPERFAMILY RNI-like 273 659 - -
Apr4g1869 1132 PRINTS Leucine-rich repeat signature 486 499 - -
Apr4g1869 1132 PRINTS Leucine-rich repeat signature 628 641 - -
Apr4g1869 1132 SMART LRR_sd22_2 628 653 - -
Apr4g1869 1132 SMART LRR_sd22_2 146 169 - -
Apr4g1869 1132 SMART LRR_sd22_2 339 365 - -
Apr4g1869 1132 ProSiteProfiles Protein kinase domain profile. 781 1067 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr4g1869 1132 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 3 1088 - -
Apr4g1869 1132 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE RCH1 3 1088 - -
Apr4g1869 1132 Gene3D Ribonuclease Inhibitor 28 234 IPR032675 -
Apr4g1869 1132 SMART LRR_typ_2 651 676 IPR003591 -
Apr4g1869 1132 SMART LRR_typ_2 291 315 IPR003591 -
Apr4g1869 1132 SMART LRR_typ_2 339 362 IPR003591 -
Apr4g1869 1132 SMART LRR_typ_2 483 507 IPR003591 -
Apr4g1869 1132 SMART LRR_typ_2 411 435 IPR003591 -
Apr4g1869 1132 SMART LRR_typ_2 531 555 IPR003591 -
Apr4g1869 1132 SMART LRR_typ_2 579 603 IPR003591 -
Apr4g1869 1132 SMART LRR_typ_2 628 650 IPR003591 -
Apr4g1869 1132 SMART LRR_typ_2 146 170 IPR003591 -
Apr4g1869 1132 SMART LRR_typ_2 363 387 IPR003591 -
Apr4g1869 1132 ProSitePatterns Serine/Threonine protein kinases active-site signature. 916 928 IPR008271 GO:0004672|GO:0006468
Apr4g1869 1132 Gene3D Ribonuclease Inhibitor 331 427 IPR032675 -
Apr4g1869 1132 Gene3D Ribonuclease Inhibitor 235 330 IPR032675 -
Apr4g1869 1132 Gene3D Ribonuclease Inhibitor 428 524 IPR032675 -
Apr4g1869 1132 Gene3D Ribonuclease Inhibitor 609 696 IPR032675 -
Apr4g1869 1132 ProSiteProfiles Leucine-rich repeat profile. 341 364 IPR001611 GO:0005515
Apr4g1869 1132 SUPERFAMILY L domain-like 32 305 - -
Apr4g1869 1132 ProSitePatterns Protein kinases ATP-binding region signature. 787 809 IPR017441 GO:0005524
Apr4g1869 1132 Gene3D Transferase(Phosphotransferase) domain 1 872 1088 - -
Apr4g1869 1132 Pfam Leucine rich repeat 316 376 IPR001611 GO:0005515
Apr4g1869 1132 SUPERFAMILY Protein kinase-like (PK-like) 764 1064 IPR011009 -
Apr4g1869 1132 Pfam Leucine Rich repeat 411 426 IPR001611 GO:0005515
Apr4g1869 1132 Pfam Protein tyrosine and serine/threonine kinase 784 1062 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g1869 Apr-Chr4 26150440 26154108 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g1869 30 1113 Receptor kinase-like Gene Family AT5G56040 47.688 0.0 970
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Apr4g1869 PK_Tyr_Ser-Thr 1.2e-39 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g1869 - - gmx:100815339 1926.37