Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g1865 ATGTCAGGGCAGAGAAGGTCAAGATCAGCTTCAATGTTCACAGAGAATGAGATCAATGATCTTGTGTTAAGGTTACAAGTTCTGCTGCCACAGATGAACCAAAGAGGCAACTCAAAGCAATCAGCGTCCAAGATCTTGCAGGAAACCTGTTGTCACATTAGGAGGCTGCAGAAAGAGGTGGAAGAGCTCAGTGAGAGGCTATCAGAACTGATGGATTCTGTTGATATCAGTGATATTGACCGAAGAACTTTACAAAACTTTCTGCGACAATAA 273 0.4286 MSGQRRSRSASMFTENEINDLVLRLQVLLPQMNQRGNSKQSASKILQETCCHIRRLQKEVEELSERLSELMDSVDISDIDRRTLQNFLRQ* 91
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g1865 90 PANTHER DNA BINDING PROTEIN 1 90 - -
Apr4g1865 90 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 16 73 IPR036638 GO:0046983
Apr4g1865 90 Coils Coil 46 73 - -
Apr4g1865 90 Gene3D - 15 89 IPR036638 GO:0046983
Apr4g1865 90 PANTHER DNA BINDING PROTEIN 1 90 IPR044172 -
Apr4g1865 90 Pfam Helix-loop-helix DNA-binding domain 17 57 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g1865 Apr-Chr4 26054180 26055368 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g1865 5 75 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G47710 57.895 6.99e-22 80.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Apr4g1865 HLH 9.8e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g1865 - - gmx:100810266 101.293