Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g1864 ATGGAGGTGCTGTCTCTAAGACTTTTAACTCTCTGCATTCTAGTCACCACGCTGCTTTTAGCTACCACCAACGCAATCAATGACAATGGGATACAGAAACAGAAAGCCAATGAATCAAGGGATGTGGTTGAAGAGAAGAGCTTGAAGAATTCGTCAATGGCAGAAAGGTCAAGGGATGCTTTGAATGAGCATGCAGTTGATAATCCAGAGGAGATTGCTTCCATGGTTGATACGAGCATACGCAATTCCACGGCGAGAAGGAATCTGAACTTTTTCTCATGTGGGACCGGGAATCCAATCGACGACTGCTGGCGCTGCGACAAGCGCTGGTATCTCCGTCGAAAGCGGTTAGCTGATTGCGCCATCGGTTTCGGCCGCAACGCCGTCGGTGGCCGCGACGGAAGGTACTACGTGGTGACGGACCCAAGCGACGACGACGCCGTGAACCCGAAACCAGGCACACTCCGTCACGCGGTGATTCAGGACAGGCCCTTGTGGATTGTGTTCAAGAGGGACATGTTGATCACCCTGAAGCAAGAACTCATCATGAACAGCTTTAAGACCATCGATGGTCGTGGCGTCAACGTCCACATTGCCTATGGTGCCTGCATCACCATCCAGTTCATCACAAATGTCATCATCCATGGCCTCAACATCCATGATTGCAAGCAGACTGGCAATGCCATGGTTCGCAGCTCCCCCTCCCACTATGGATGGAGGACCCTTGCTGATGGTGATGGCATTTCCATCTTTGGTTCTAGCCACATTTGGCTTGACCACAATTCACTCTCCAATTGCGCTGATGGCCTTATTGATGCCATTATGGGCTCCACTGCCATCACCATTTCCAACAACTACTTCACCCACCACAATGAGGTTATGCTACTGGGTCACAGTGACTCTTATGTCCGGGACAAGCAGATGCAGGTAACCATTGCATACAACCATTTTGGGGAGGGTCTTATCCAAAGAATGCCAAGGTGCAGACATGGATACTTCCACGTGGTAAATAACGATTATACGCACTGGGAAATGTATGCAATTGGCGGCAGCGCTGATCCCACAATTAACAGCCAGGGCAACAGATACCTTGCTCCTCAAAACCCTTTTGCTAAAGAGGTGACAAAGAGGGTGGATACAGGGGAACCCATATGGAAAGGTTGGAATTGGAGGTCTGAGGGAGACCTTATGCTCAATGGAGCCTTTTTCACTTCGTCAGGAGCAGGAGCTGCAGCAAGCTATGCTAGAGCCTCAAGTTTGGGGGCCAAATCATCTTCTTTGGTTGGTACCATCACCTCTGGCGCTGGTGTTCTTACCTGTCGCCGGGGTTTCATGTGTTAA 1341 0.5019 MEVLSLRLLTLCILVTTLLLATTNAINDNGIQKQKANESRDVVEEKSLKNSSMAERSRDALNEHAVDNPEEIASMVDTSIRNSTARRNLNFFSCGTGNPIDDCWRCDKRWYLRRKRLADCAIGFGRNAVGGRDGRYYVVTDPSDDDAVNPKPGTLRHAVIQDRPLWIVFKRDMLITLKQELIMNSFKTIDGRGVNVHIAYGACITIQFITNVIIHGLNIHDCKQTGNAMVRSSPSHYGWRTLADGDGISIFGSSHIWLDHNSLSNCADGLIDAIMGSTAITISNNYFTHHNEVMLLGHSDSYVRDKQMQVTIAYNHFGEGLIQRMPRCRHGYFHVVNNDYTHWEMYAIGGSADPTINSQGNRYLAPQNPFAKEVTKRVDTGEPIWKGWNWRSEGDLMLNGAFFTSSGAGAAASYARASSLGAKSSSLVGTITSGAGVLTCRRGFMC* 447
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g1864 446 MobiDBLite consensus disorder prediction 33 57 - -
Apr4g1864 446 Gene3D - 97 439 IPR012334 -
Apr4g1864 446 PRINTS Pollen allergen Amb family signature 120 137 IPR018082 -
Apr4g1864 446 PRINTS Pollen allergen Amb family signature 144 169 IPR018082 -
Apr4g1864 446 PRINTS Pollen allergen Amb family signature 180 196 IPR018082 -
Apr4g1864 446 PRINTS Pollen allergen Amb family signature 244 265 IPR018082 -
Apr4g1864 446 PRINTS Pollen allergen Amb family signature 324 343 IPR018082 -
Apr4g1864 446 PRINTS Pollen allergen Amb family signature 346 365 IPR018082 -
Apr4g1864 446 PRINTS Pollen allergen Amb family signature 388 412 IPR018082 -
Apr4g1864 446 PRINTS Pollen allergen Amb family signature 417 440 IPR018082 -
Apr4g1864 446 PANTHER PECTATE LYASE 18 443 - -
Apr4g1864 446 PANTHER PECTATE LYASE 18-RELATED 18 443 IPR045032 GO:0030570
Apr4g1864 446 SUPERFAMILY Pectin lyase-like 75 441 IPR011050 -
Apr4g1864 446 MobiDBLite consensus disorder prediction 34 57 - -
Apr4g1864 446 SMART amb_all 172 369 IPR002022 -
Apr4g1864 446 Pfam Pectate lyase 181 361 IPR002022 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g1864 Apr-Chr4 26034743 26039923 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g1864 44 446 Polysaccharide Lyase AT4G13710 77.129 0.0 674
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g1864 K01728 - gmx:100790659 786.949
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr4g1864 4 26034743 26039923 Apr4g1864 4 26034743 26039923 ECH