Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g1861 ATGGAGGATGAAGAAAAGGTGGGGAAAGTGGGAGAAAGCGAAGGAGAAGATGCATCAAGAGTATTCCCATGTCTATTCTGTTCAAGAAAGTTTTACAGTTCTCAAGCTTTAGGAGGACACCAAAATGCTCACAAGAAAGAAAGAACAGCTGCAAGAAAAGCCAAGAGGGTTTCTGAGTACTCCTGTGCTTCCTTTTCTTCCCCTTTGGTTTTTGCTCCAACCCATCATCATCTAGATATGTTTATCACTGCCCATGCTGCAAAACTACCTCATATCCCAAGCCATCAAAATTCACAACAATTAGGATCAAATGGTGCCCCTAGATTTGACAGTGGCAAGAGTTTCGTTAATTGGCAAAATAGTAGCTTCAACTGGGGTGACACATCTCAACATACACCGTTGATAAGTAACAACCAAAATGTTGAAATGTGGATAAATGGTACAGAGAAAGAGCAAAAGCTTGATTTATCTCTTCATTTGTAG 483 0.4037 MEDEEKVGKVGESEGEDASRVFPCLFCSRKFYSSQALGGHQNAHKKERTAARKAKRVSEYSCASFSSPLVFAPTHHHLDMFITAHAAKLPHIPSHQNSQQLGSNGAPRFDSGKSFVNWQNSSFNWGDTSQHTPLISNNQNVEMWINGTEKEQKLDLSLHL* 161
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g1861 160 ProSiteProfiles Zinc finger C2H2 type domain profile. 22 49 IPR013087 -
Apr4g1861 160 PANTHER ZINC FINGER PROTEIN JAGGED 10 160 IPR045320 GO:0003700
Apr4g1861 160 SUPERFAMILY beta-beta-alpha zinc fingers 20 49 IPR036236 -
Apr4g1861 160 ProSitePatterns Zinc finger C2H2 type domain signature. 24 44 IPR013087 -
Apr4g1861 160 Gene3D Classic Zinc Finger 3 67 - -
Apr4g1861 160 PANTHER PROTEIN LATE FLOWERING 10 160 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g1861 Apr-Chr4 25971751 25978704 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g1861 20 97 C2H2 Transcription Factor Family AT5G10970 46.988 2.46e-16 72.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g1861 - - gmx:100527084 225.328
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr4g1861 4 25971751 25978704 Apr4g1861 4 25971751 25978704 ECH