Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Apr4g1849 | ATGGAAGATTCTGATCAACTTGCTAAATCTGTGGAAGACCAGCAAACTGAACAAGTGTGTAGTTTCTTCAGAAAACCGGTTAATAGGAAGAATATAAGGAAACGCACTATTGATAATGAAGATGAGGAGGACTCAAACAAAGAAAGCTCTTTGTTGCATACTCAGAAAAAGACCTTGAGGCCTGACAATAAGTTGTATTTTTCCACTGGCTCTTCAAAAAGCTCTGCACCTGCTGAACCAAGTGAAGAACCTGGTAAACCAGTCTTTCAGTTCGAGTCCTCTAAAGAGATTCAAGTTCAACATGATAGCAAGGCAACAGCAATTCTAGAGACTGAGACTGAGTTTACAAAAGATGCTCGTGCCATCCGTGAAAGAGCTCTTAAGCAAGCAGCGGCGAGTCTGAAAGGGAAAAGCACAAATTCTGAGGATGAAAAACTATATAAGGGAATCAACAGTTACAAAGACTATAAAGCTGGCTTTCGCAGAGAACAAACAATTGCTAGTGAAAAAGCTGGTGGGGCACATGGTCCTCTTAGGGCTTCAGCTCATATAAGAGTCTCAGCAAGATTTGATTATCAGCCTGATATATGTAAGGATTACAAGGAAACTGGTTATTGTGGATATGGTGATGCATGTAAATTTATGCACGATAGAGGGGATTACAAGTCTGGGTGGCAATTGGAGAAGGAATGGGAAGAAGCTGAGAAAGCAAAGAGGATGAGATTGGCTGCAGGTGAGGATGCAGATGAGGAGGAGGGTGCTAATTTGACTGATGAAGATGATGATGATTCATTACCATTTGCATGCTTCATTTGTAGAAATCCTTTTGTGGATCCTGTTGTAACCAAGTGCAAGCACTACTTCTGTGAGCATTGTGCATTGAAGCATCATGCAAAGAATAAGAAGTGTTTTGTCTGTAACCAGCCAACCCTCGGCATTTTTAATGTTGCTCATGAGATACGCAGGAAGATGGCCGAGGATAAATAA | 987 | 0.4124 | MEDSDQLAKSVEDQQTEQVCSFFRKPVNRKNIRKRTIDNEDEEDSNKESSLLHTQKKTLRPDNKLYFSTGSSKSSAPAEPSEEPGKPVFQFESSKEIQVQHDSKATAILETETEFTKDARAIRERALKQAAASLKGKSTNSEDEKLYKGINSYKDYKAGFRREQTIASEKAGGAHGPLRASAHIRVSARFDYQPDICKDYKETGYCGYGDACKFMHDRGDYKSGWQLEKEWEEAEKAKRMRLAAGEDADEEEGANLTDEDDDDSLPFACFICRNPFVDPVVTKCKHYFCEHCALKHHAKNKKCFVCNQPTLGIFNVAHEIRRKMAEDK* | 329 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Apr4g1849 | 328 | Coils | Coil | 315 | 328 | - | - | |
| Apr4g1849 | 328 | ProSiteProfiles | Zinc finger C3H1-type profile. | 191 | 219 | IPR000571 | GO:0046872 | |
| Apr4g1849 | 328 | MobiDBLite | consensus disorder prediction | 32 | 60 | - | - | |
| Apr4g1849 | 328 | PANTHER | ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 1-LIKE | 11 | 327 | - | - | |
| Apr4g1849 | 328 | SUPERFAMILY | RING/U-box | 268 | 311 | - | - | |
| Apr4g1849 | 328 | CDD | RING-HC_RNF113A_B | 267 | 307 | - | - | |
| Apr4g1849 | 328 | MobiDBLite | consensus disorder prediction | 61 | 78 | - | - | |
| Apr4g1849 | 328 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 192 | 217 | IPR000571 | GO:0046872 | |
| Apr4g1849 | 328 | SMART | ring_2 | 269 | 306 | IPR001841 | - | |
| Apr4g1849 | 328 | MobiDBLite | consensus disorder prediction | 30 | 97 | - | - | |
| Apr4g1849 | 328 | Pfam | Zinc finger, C3HC4 type (RING finger) | 268 | 310 | - | - | |
| Apr4g1849 | 328 | ProSitePatterns | Zinc finger RING-type signature. | 284 | 293 | IPR017907 | - | |
| Apr4g1849 | 328 | Gene3D | - | 189 | 223 | - | - | |
| Apr4g1849 | 328 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 267 | 326 | IPR013083 | - | |
| Apr4g1849 | 328 | ProSiteProfiles | Zinc finger RING-type profile. | 269 | 307 | IPR001841 | - | |
| Apr4g1849 | 328 | PANTHER | ZINC FINGER PROTEIN 183 | 11 | 327 | IPR039971 | - | |
| Apr4g1849 | 328 | SUPERFAMILY | CCCH zinc finger | 190 | 222 | IPR036855 | GO:0046872 | |
| Apr4g1849 | 328 | SMART | c3hfinal6 | 191 | 218 | IPR000571 | GO:0046872 |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Apr4g1849 | 10 | 328 | C2H2 Transcription Factor Family | AT1G01350 | 68.438 | 9.65e-163 | 456 |
Transcription factors information
| Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
|---|---|---|---|---|---|---|---|
| TF | C3H | Apr4g1849 | zf-C3HC4_3 | 8.9e-09 | CL0229 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Apr4g1849 | K13127 | - | gmx:100787434 | 593.964 |