Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g1846 ATGAGTTGCTTTTCATGTTTTTCTTCCAACGAAAAAAAAGCATCAAAGAGGCCTAACAATGGAAAGAGGGTACAACAACTTGCTACCCAATCTCCCAAGGAACCATCCCAACTAGCTCAACCAAGGCCAGAGAATCATAAAAAAAAGGTGCAAACAGAACCTCAAGTGAACAAAGAGGCCAACAAAGATAATGGAAACAATAACATTGCTGCCCAAACGTTCACCTTCAGGGAGTTGGCTGTTATCACCAAGAACTTCAGGCAGGATTGCCTAATAGGTGAAGGGGGTTTTGGGAGGGTTTATAGAGGAAGGCTAGAAAAAACCAACCAGGATGTAGCTGTGAAGCAACTTGACAGGAATGGATTGCAAGGGAACAGAGAGTTTCTTGTTGAAGTTTTAATGTTGAGCCTCTTGCACCATCAAAATCTAGTGAATTTAATTGGATATTGTGCTGATGGAGATCAAAGATTATTGGTATATGAGTACATGTCATTAGGATCTCTTGAGGACCATTTGCTTGATCTCCAGCCACATGAAAAGCCTCTAGATTGGTTAACCAGAATGAAAATAGCTTTGGATGCTGCAAAAGGTCTAGAATATTTGCATGACAAGGCCAATCCACCAGTCATATACCGTGATTTAAAATCCTCTAACATCTTGCTAGACAAAGATTTCAATGCAAAACTCTCTGATTTTGGACTAGCAAAGTTGGGACCTACAGGGGACAAGTCTCATGTCTCATCTAGAGTAATGGGCACTTATGGATATTGTGCACCTGAGTATCAAAGAACTGGTCAACTAACTGTAAAATCAGATGTATACAGCTTTGGAGTTGTTCTACTTGAATTGATCACTGGAAGGAGAGCCATTGATAACACAAGAACAACAAGGGAGCAAAATTTAGTTTCATGGGCATATCCAGTATTCAAGGACCCTCATAGATACTCAGAATTAGCAGATCCCATTCTTCAAGGAAACTATCCAATAAGATCATTGCATCAAGCAGTGGCAGTAGCAGCCATGTGTCTCAATGAGGAGTCATCAGTGAGACCCTTGATCAGTGATGTTGTCACAGCTCTTAGTTTCCTTGGTACAATTCCTGGGAGTCAAGACCCCGCACTAACTGCACCAATTGACATGCCCTCCCCACCACAAGACAAAGAAGCCAATAATAATGCCACTTTGAATCTTCTTGATGATGATAGTGTCATGGAACGCCAAAGAGCAGTTGCTGAAGCAATTGAATGGGGTTCAAATACTAGGAAGAAAGCACATCAGCATGAAAGCTGA 1290 0.4132 MSCFSCFSSNEKKASKRPNNGKRVQQLATQSPKEPSQLAQPRPENHKKKVQTEPQVNKEANKDNGNNNIAAQTFTFRELAVITKNFRQDCLIGEGGFGRVYRGRLEKTNQDVAVKQLDRNGLQGNREFLVEVLMLSLLHHQNLVNLIGYCADGDQRLLVYEYMSLGSLEDHLLDLQPHEKPLDWLTRMKIALDAAKGLEYLHDKANPPVIYRDLKSSNILLDKDFNAKLSDFGLAKLGPTGDKSHVSSRVMGTYGYCAPEYQRTGQLTVKSDVYSFGVVLLELITGRRAIDNTRTTREQNLVSWAYPVFKDPHRYSELADPILQGNYPIRSLHQAVAVAAMCLNEESSVRPLISDVVTALSFLGTIPGSQDPALTAPIDMPSPPQDKEANNNATLNLLDDDSVMERQRAVAEAIEWGSNTRKKAHQHES* 430
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g1846 429 MobiDBLite consensus disorder prediction 1 67 - -
Apr4g1846 429 PANTHER OS07G0668900 PROTEIN 1 424 - -
Apr4g1846 429 ProSitePatterns Protein kinases ATP-binding region signature. 92 115 IPR017441 GO:0005524
Apr4g1846 429 Gene3D Phosphorylase Kinase; domain 1 55 162 - -
Apr4g1846 429 MobiDBLite consensus disorder prediction 40 56 - -
Apr4g1846 429 PANTHER SERINE/THREONINE-PROTEIN KINASE PBL26-RELATED 1 424 - -
Apr4g1846 429 ProSiteProfiles Protein kinase domain profile. 86 363 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr4g1846 429 ProSitePatterns Serine/Threonine protein kinases active-site signature. 209 221 IPR008271 GO:0004672|GO:0006468
Apr4g1846 429 Gene3D Transferase(Phosphotransferase) domain 1 163 366 - -
Apr4g1846 429 CDD STKc_IRAK 92 360 - -
Apr4g1846 429 MobiDBLite consensus disorder prediction 1 38 - -
Apr4g1846 429 SMART serkin_6 86 363 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr4g1846 429 MobiDBLite consensus disorder prediction 373 392 - -
Apr4g1846 429 Pfam Protein kinase domain 89 355 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr4g1846 429 SUPERFAMILY Protein kinase-like (PK-like) 72 384 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g1846 Apr-Chr4 25584463 25587612 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g1846 1 421 Glycoside Hydrolase AT3G07070 67.139 0.0 556
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-1 Apr4g1846 Pkinase 4.7e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g1846 - - gmx:100786405 717.227
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr4g1846 4 25584463 25587612 Apr4g1846 4 25584463 25587612 ECH
Apr4g1846 4 25584463 25587612 Apr2g2242 2 27554010 27557684 ECH
Apr4g1846 4 25584463 25587612 Apr3g1417 3 28735098 28739434 ECH