Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g1844 ATGGCTTTCTGGATCCCACTCTTTTTACTTCTCTCAATTTTTTCATTCCAAAGTTCATTTTCTTTATCGTCATTGAACATGGGCTCCTCCCTCTCAGTGGAGAAGCCTGAAGAAGACGTTATTGTCTCCCAAAATGGAGTGTTCTCTGCAGGCTTCTTTCAAGTTGGGGAAAACGCATATACCTTCGCCATATGGTTCACGGAGCCTCGCACCATCGTTTGGATGGCAAATCGTAACCAACCCATCAACGGAAAGCGCTCAAAGCTTTCACTATCATACAGTGGTAACACTGTCTTGGTTGATGCAGGTGAAAGCAACACGTGGTCTTCAAACACAGCATCACAAGCCCCAACACAGTTGTATCTTAGAGATGATGGAAATCTTGTGTTACATGAACTGCCAAGTACGAATAGCATTTTGTGGCAAAGTTTTGATTTTCCAACTCATACTCTCCTTCCCGGTCAACGTCTTAGTGCATATACACAACTTGTGTCTTCTAGAAGCCCAAGTAACCATTCCTCTGGTTTCTATACGTTGTTCTTTGGTGACAACAACGTTCTTAGTCTTGTTTATCATGGTCTTGATGTTTCAAGCACTTACTGGCCACAAACTTGGTTACTACCTCGGCAAGTTGGAAGGTTTGATTACAATAGCAACAGAGATGCAGGGTTGGATTCTCTTGGAATTTTCACTTCATCCGATAATTATAATTTTTCCACTAATGATCATGGCACGCTGATGCAAAGGAGATTAACACTGGATTCTGACGGCAACGTTCGTGTGTATAGTAGACATAATGCCTCCAAGAATTGGTACGTTTCATGGCAAGTCATATCAGATGCTTGCACCATTCATGGAATTTGTGGAGCTAACAGTACCTGCAGTTATTATCCTGAAGGGAGAAGGAGATGCTCGTGTTTACCAGGGTACAAACTAAAGAACCATAGTGATTGGTCTTATGGGTGTGAACCCGTGTTTCATCTTACTTGCTATAGAAATGAGTCTACCTTTTTTAAGATGCAAGGTGTTGAGTTTTATGGTTATGATAGTAATTATGTCCAAAACAGTACTCACGTGAATTGTGTGAATTTATGTTTACAAGATTGTAACTGTAAAGGGTTTCAATATAGATATGATAGGAACAAAGGCTTTAGCAGCTGCTTTACAAAGTTACAGTTGCAGAATGGAAGGCGCTCACCTCGTTATAATGGAGCAATTTACATGAGAGTGCCTAAAAATACTAAGATCTCCGAGGAAGAATTTGAGAGTGCATGTGATCATTTATGTTTCGTGGAGCTTCACAGGGATAAAAAACAGGTAAGCCGTTTGGTATGGTTGCTTCTGTGGCTAGCTATAGCATTTGGAGCTATAGAAATAGTTTGCATTTTGGTGGTTTGGTGTGTATTAAGTAGTAACCGCCAAAAGATTGGTGTAGATGAGCAAGGCTGTCGCCTTTCTGCAGTAGGATTCAAAAAATTCAGTTATTCTGAGTTGAAGAAAGCCACAAAGGAGTTCAGTGAAGAGATTGGAAGGGGAGCAAGTGGGATTGTATACAGAGGTATTTTGTCAGATCAAAGACACGCAGCAATAAAGAGACTCAACGAAGCTAAACAAGAAGAAGGGGAATTCCTTGCAGAAGTGAGCATCATCGGAAGGCTTAACCACATGAACTTGATTGAAATGTGGGGATATTGTGCTGAGGGAAAGCATAGGTTGTTGGTGTATGAGTATATGGAAAATGGTTCATTGGCAGAAAATCTCTCATCTAGCAGCACACTTGATTGGAGCAAGAGATATGAGATTGCTCTTGGAACGGCTAGAGTTCTAGCTTATCTACACGAAGAATGCCAAGAATGGATTTTGCACTGCGACATAAAGCCTCAAAACATTCTTCTTGATGGTAATTATCAGCCCAGGGTAGCTGATTTTGGCTTCTCTAAGTTACTGAACAGAAACAACCTCAATAATTTAAGCTTCTCAATGATAAGAGGAACGCGAGGTTATATGGCACCAGAGTGGGTTTACAATTTACCGATTACCTCCAAAGTGGATGTTTATAGCTATGGAATTGTTCTCTTAGTGATGATAACTGGGAAGAGTCCTACAACGGATGTTGAAACAGTTGATGGAACAGAGGCATGCAACGAGAGGCTGGTAACATGGGTGAGAAAGAGAAAAAGGAGCACATATTGGGTGGAGCAAATCATGGATCCTGCAATTGGTCCAAATTATGATGCAAGTAAGATGGAAATTTTGGCCAGAGTTGCTTTGGACTGTGTAGAGGAAGACAAAGAAGCAAGACCCACCATGAGGCAAGTGGTTGAGATGCTGCAAAGCCATGACAGCAATATAGAGTGA 2358 0.4122 MAFWIPLFLLLSIFSFQSSFSLSSLNMGSSLSVEKPEEDVIVSQNGVFSAGFFQVGENAYTFAIWFTEPRTIVWMANRNQPINGKRSKLSLSYSGNTVLVDAGESNTWSSNTASQAPTQLYLRDDGNLVLHELPSTNSILWQSFDFPTHTLLPGQRLSAYTQLVSSRSPSNHSSGFYTLFFGDNNVLSLVYHGLDVSSTYWPQTWLLPRQVGRFDYNSNRDAGLDSLGIFTSSDNYNFSTNDHGTLMQRRLTLDSDGNVRVYSRHNASKNWYVSWQVISDACTIHGICGANSTCSYYPEGRRRCSCLPGYKLKNHSDWSYGCEPVFHLTCYRNESTFFKMQGVEFYGYDSNYVQNSTHVNCVNLCLQDCNCKGFQYRYDRNKGFSSCFTKLQLQNGRRSPRYNGAIYMRVPKNTKISEEEFESACDHLCFVELHRDKKQVSRLVWLLLWLAIAFGAIEIVCILVVWCVLSSNRQKIGVDEQGCRLSAVGFKKFSYSELKKATKEFSEEIGRGASGIVYRGILSDQRHAAIKRLNEAKQEEGEFLAEVSIIGRLNHMNLIEMWGYCAEGKHRLLVYEYMENGSLAENLSSSSTLDWSKRYEIALGTARVLAYLHEECQEWILHCDIKPQNILLDGNYQPRVADFGFSKLLNRNNLNNLSFSMIRGTRGYMAPEWVYNLPITSKVDVYSYGIVLLVMITGKSPTTDVETVDGTEACNERLVTWVRKRKRSTYWVEQIMDPAIGPNYDASKMEILARVALDCVEEDKEARPTMRQVVEMLQSHDSNIE* 786
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g1844 785 ProSiteProfiles EGF-like domain profile. 278 316 IPR000742 -
Apr4g1844 785 CDD STKc_IRAK 509 778 - -
Apr4g1844 785 Gene3D - 21 145 IPR036426 -
Apr4g1844 785 CDD B_lectin 41 147 IPR001480 -
Apr4g1844 785 Pfam S-locus glycoprotein domain 234 313 IPR000858 GO:0048544
Apr4g1844 785 Pfam D-mannose binding lectin 71 159 IPR001480 -
Apr4g1844 785 Gene3D Phosphorylase Kinase; domain 1 470 577 - -
Apr4g1844 785 SUPERFAMILY Protein kinase-like (PK-like) 487 778 IPR011009 -
Apr4g1844 785 ProSitePatterns Protein kinases ATP-binding region signature. 509 531 IPR017441 GO:0005524
Apr4g1844 785 ProSiteProfiles Bulb-type lectin domain profile. 16 143 IPR001480 -
Apr4g1844 785 Gene3D Transferase(Phosphotransferase) domain 1 578 785 - -
Apr4g1844 785 ProSitePatterns Serine/Threonine protein kinases active-site signature. 620 632 IPR008271 GO:0004672|GO:0006468
Apr4g1844 785 Pfam PAN-like domain 330 390 IPR003609 -
Apr4g1844 785 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 5 782 - -
Apr4g1844 785 SUPERFAMILY alpha-D-mannose-specific plant lectins 63 164 IPR036426 -
Apr4g1844 785 ProSiteProfiles Protein kinase domain profile. 503 783 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr4g1844 785 Pfam Protein kinase domain 505 775 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr4g1844 785 PIRSF SRK 1 785 IPR024171 GO:0004674
Apr4g1844 785 PANTHER SERINE/THREONINE KINASE, PLANT-TYPE PROTEIN 5 782 - -
Apr4g1844 785 ProSiteProfiles PAN/Apple domain profile. 330 411 IPR003609 -
Apr4g1844 785 SMART blect_4 32 147 IPR001480 -
Apr4g1844 785 CDD PAN_AP_plant 326 411 - -
Apr4g1844 785 SMART serkin_6 503 777 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g1844 Apr-Chr4 25569462 25571819 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g1844 493 779 Trihelix Transcription Factor Family AT5G38560 40.541 2.30e-62 220
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Apr4g1844 Pkinase 3.8e-54 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g1844 - - gmx:100784287 1114.37