Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g1839 ATGAAGTCCACTATGGCTCAGAATCAGAGTAATTGGGAAGCTGATAAAATGCTCGACGTTTACATTTATGATTATTTAATAAAAAGAAAATTAAACACAGCCGCCAAAGCTTTTATGGCAGAAGGAAAAGTTTCCACGGATCCAGTAGCAATTGATGCTCCTGGAGGATTTCTTTTCGAGTGGTGGTCTGTCTTTTGGGATATATTCATCTCAAGGACAAATGAGAAACATTCAGAGGCTGCTGCAGCTTACATTGAGACCCAGCAAACAAAGGCTAGAGAACAGCATCTTCAAATGCAGCAATTGCAAATAATGCAGCAACGCAGTGCAGCTCAATTACAGAGAAGAGACCCTAATCATCCTTCACTTGGTGGTTCCTTAAATGCCATGAATTCTGAAGGAATGTTGGGGCAGCCACCAGCAAGTGTGTTGGCCATGAAAATGTATGAAGAACGAATGAAACACCCTCATTCAATGGATTCAGAGGCATCTCCAACTCTTATTGACGCCAACAGGATGGCCCTTCTCAAATCAGCAGCTAGTCATCAAGGCCAGTTGGTTCATGGAAATTCAGGGAATATGTCCACTGCGTTGCAGCAAATTCCAGGGTGGACTCCTCTGACCACTGATATCAAAGCAGAAGTTAATATAGGTGCCACTCCAAAGAGTCTGCCTATGGATTCCTCAGTTTATCGACAAGCAATTTTACAATCAAAATCTGGGCTAGGAAGTGCAGCATTAAATCAAGGAGTTACAAGTCTTCCACTGAAGGGTTGGCCTCTAACTGGAATTGATCAGCTAAGACCTAATATGGGTGTACAAGTTCCAAAGCCCAATTTGACAACCCAAAACCAGTTTCTTTTGGCATCACAACAACAGGTTTTGGCACAGGCTCAGGCACAAAATAACCTTGGAAATTCAAATTATGGTGATATGGATCAACGTAGACTTTCTGGTCTTCCCCGAGGTAGCTTAAGTGCAAAGGATGTTCAGTCTACAAGGAATGATGGATCTACTTGCTCCCAAATGCAGTCAGATTCACCTAAGATGAAGATGGCCCAGTCGCAACATTCATTATCTCAACAGCAGGATCAATTGCAGCAGCAGCAACTGCAGCAGACTAACAGAAAAAGAAAACAGCATTCTTCTTCTGGAGCTGCCAATAGCACTGGCACTGGTGGTAACACTGCTGTTCCTTCACCTAATTCGCCACCATCAACGCATACACCTGGGGATGGATTAAATACAGCAAGCAGCATGCAGCATGCTAATAGTGTGCAAAAGAGCATGATGATGTATGGTACAGAGGCAACAGGAGGTCTTGCATCATCATCAAATTTGCTGGAGGACATGGAACGATTTGGGGATGTTGGTGCTTTAGAAGATAATGTGGAATCCTTTCTATCAAATGATGGAGGAGATGGTGGAAATCTCTATGGAACAATAAAACCAAGTTCAGCTGAGCAACAAAAAGAGTCTCCGAAAGGCTTCACCTTTGCCGAGTTTGGGTGTATAAGAACAAGGAACAGTAAAGTTACTTGTTGTCACTTTTCTTCTGATGGAAAGTGGCTTGCCAGTGCTGGAGATGACATGAAGGCTGTCATCTGGAACATGGACACTTTACAGACAGAGAGCACTCCTGCAGAGCACAAATCAGTTATTTCAGATATCCGTTTTAGACCAAATTCATCTCAGTTGGCAACAGCCTCAATCGATAAATCAGTGCGATTATGGGATGCAACCAATCCAAGCTATTGTTTGCAACAATATAGTGGGCACACTTCAGCTATAATGTCTCTTGATTTCCACCCTAAGAAGACTGATATTTTCTGCTTCTGTGATGGTGAAAATGAAATTCGGTATTGGAACATTACTTCGTCCTCTTGCACCCGTGTATCTAAGGGAGGTAGTGCACAAGTGAGGTTTCAACCTAGACTGGGACATTTGCTGGCAGCAGCTTCTGATAAAGTAGTGTCAATTTTTGATGTTGAAGCTGATACACAAATTTACTCCCTCCAGGGTCATCCCGAACCAGTGAGCTATATTTGCTGGGACACTCATGGTGATGTCTTGGCATCTGTGAGTCCACATTTGGTGAAAGTTTGGAATTTGGGCACAGGAGAATGCATGCAGGAGTTCGGCTCTGGCGTGAACCAATTTCATTCCTGTACTTTCCATCCAAGTTATTCAACTTTATTGGTGATTGGAGGAATTTCGTCCTTAGATTTATGGAACATGGCAGAGAACAAAAGCATGACAATTCCTGCACATGACAATATCATATCTGCTTTGGCTCCGTCTCCTGCCACTAGAATGGTTGCCTCTGCAAGTCATGACAACTGTGTTAAACTGTGGAAATAA 2361 0.4299 MKSTMAQNQSNWEADKMLDVYIYDYLIKRKLNTAAKAFMAEGKVSTDPVAIDAPGGFLFEWWSVFWDIFISRTNEKHSEAAAAYIETQQTKAREQHLQMQQLQIMQQRSAAQLQRRDPNHPSLGGSLNAMNSEGMLGQPPASVLAMKMYEERMKHPHSMDSEASPTLIDANRMALLKSAASHQGQLVHGNSGNMSTALQQIPGWTPLTTDIKAEVNIGATPKSLPMDSSVYRQAILQSKSGLGSAALNQGVTSLPLKGWPLTGIDQLRPNMGVQVPKPNLTTQNQFLLASQQQVLAQAQAQNNLGNSNYGDMDQRRLSGLPRGSLSAKDVQSTRNDGSTCSQMQSDSPKMKMAQSQHSLSQQQDQLQQQQLQQTNRKRKQHSSSGAANSTGTGGNTAVPSPNSPPSTHTPGDGLNTASSMQHANSVQKSMMMYGTEATGGLASSSNLLEDMERFGDVGALEDNVESFLSNDGGDGGNLYGTIKPSSAEQQKESPKGFTFAEFGCIRTRNSKVTCCHFSSDGKWLASAGDDMKAVIWNMDTLQTESTPAEHKSVISDIRFRPNSSQLATASIDKSVRLWDATNPSYCLQQYSGHTSAIMSLDFHPKKTDIFCFCDGENEIRYWNITSSSCTRVSKGGSAQVRFQPRLGHLLAAASDKVVSIFDVEADTQIYSLQGHPEPVSYICWDTHGDVLASVSPHLVKVWNLGTGECMQEFGSGVNQFHSCTFHPSYSTLLVIGGISSLDLWNMAENKSMTIPAHDNIISALAPSPATRMVASASHDNCVKLWK* 787
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g1839 786 ProSiteProfiles Trp-Asp (WD) repeats profile. 590 632 IPR001680 GO:0005515
Apr4g1839 786 SUPERFAMILY WD40 repeat-like 503 786 IPR036322 GO:0005515
Apr4g1839 786 MobiDBLite consensus disorder prediction 469 494 - -
Apr4g1839 786 ProSiteProfiles LIS1 homology (LisH) motif profile. 14 46 IPR006594 GO:0005515
Apr4g1839 786 Pfam LisH 16 42 IPR006594 GO:0005515
Apr4g1839 786 SMART WD40_4 583 623 IPR001680 GO:0005515
Apr4g1839 786 SMART WD40_4 747 786 IPR001680 GO:0005515
Apr4g1839 786 SMART WD40_4 498 537 IPR001680 GO:0005515
Apr4g1839 786 SMART WD40_4 626 662 IPR001680 GO:0005515
Apr4g1839 786 SMART WD40_4 540 579 IPR001680 GO:0005515
Apr4g1839 786 SMART WD40_4 665 703 IPR001680 GO:0005515
Apr4g1839 786 SMART WD40_4 706 745 IPR001680 GO:0005515
Apr4g1839 786 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 754 786 - -
Apr4g1839 786 CDD WD40 509 786 - -
Apr4g1839 786 PANTHER TRANSCRIPTIONAL REGULATOR OF FILAMENTOUS GROWTH FLO8 9 786 IPR044716 GO:0003714
Apr4g1839 786 Pfam WD domain, G-beta repeat 751 786 IPR001680 GO:0005515
Apr4g1839 786 Pfam WD domain, G-beta repeat 510 537 IPR001680 GO:0005515
Apr4g1839 786 Pfam WD domain, G-beta repeat 669 703 IPR001680 GO:0005515
Apr4g1839 786 Pfam WD domain, G-beta repeat 547 579 IPR001680 GO:0005515
Apr4g1839 786 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 547 579 - -
Apr4g1839 786 MobiDBLite consensus disorder prediction 305 423 - -
Apr4g1839 786 Gene3D - 480 638 IPR015943 GO:0005515
Apr4g1839 786 ProSitePatterns Trp-Asp (WD) repeats signature. 524 538 IPR019775 -
Apr4g1839 786 Gene3D - 639 786 IPR015943 GO:0005515
Apr4g1839 786 PANTHER TRANSCRIPTION FACTOR WD40-LIKE FAMILY-RELATED 9 786 - -
Apr4g1839 786 ProSiteProfiles Trp-Asp (WD) repeats profile. 754 786 IPR001680 GO:0005515
Apr4g1839 786 ProSiteProfiles Trp-Asp (WD) repeats profile. 505 546 IPR001680 GO:0005515
Apr4g1839 786 ProSiteProfiles Trp-Asp (WD) repeats profile. 547 579 IPR001680 GO:0005515
Apr4g1839 786 Coils Coil 352 372 - -
Apr4g1839 786 MobiDBLite consensus disorder prediction 325 423 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g1839 Apr-Chr4 25440236 25450171 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g1839 522 785 Miscellaneous Gene Families AT5G08390 22.628 6.77e-15 77.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR LUG Apr4g1839 WD40 0.0018 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g1839 - - gmx:100799686 1260.36
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr4g1839 4 25440236 25450171 Apr4g1839 4 25440236 25450171 ECH