Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g1838 ATGGAGAACATCGAAGTTAGAAACTTTGTGGACAACGAATATGAAGAAATCCCCGATTCCTTTACTTGTTGCGTTTGTCTGGATATGCTATACAAGCCAATTGTGCTATCTTGTGGTCACATGTGTTGTTTCTGGTGTGTCTATAAATCAATGAATTGTTTGCGTGAGTCTCAATGTCCAATATGTAGACATCAATACTATCACTTTCCAACAGTCTGCCAAATGCTTCACTTTTTGCTTCTTAAGATTTTTTCTGTTGCTTACAAAAGAAGGGAAAATCAAATTCTTGAGGAAGAAAAGAAATCAGGCCTCTACTCCCCTCAATTTGATCCTAATACATGTGAATCACAAGCTAAATTTGGTCATGCCAGTATCCCTTCGTCCTCCTCTATTATGAATTCGGCACACAACTCATGCAATGTGAGAACTTCAGAATGTACGAAACAATCAGAGTCCTTTGCCCATAAAGAAGATGAAAGCATCATCAATTATGAGCACTCTTCTGATGGAAAGCCTAACAACATTATTGAGACTTCTATGGAAGGAAAAAATTTGCTTCAGGAAGAGTTTTCTCTGCAACAGAAAATATCAATTGTAGATGTGATGTGTACGACGTGCAACCAATTACTCTTTCATCCTGTAGTTCTTAATTGTGGTCATGTACACTGTGAAACTTGTGTCATTAAAATAGCTGATGAGATGCTTAGATGTCAAGTTTGTCAAAGTCCACATCCAAGAGGATTTCCAAAAGTGTGTTTGGAGTTTGATCACTTTTTGGAGGAACAGTTTCCTATAGAATATGGACAACGAAAAGATGCTACAGAATTAAGGCAAATCGAAGTCAATCCAAAGGCCCCTTCTTCTTGTTCATTGGATGATGGTAACAAGGGAGAAAATATAGATCGGTGGTCAAATCTTAAATCAAAGGTTCACATTGGAATTGGTTGTGATTATTGCGGGATGTTTCCAATACTTGGAGATAGATATAGATGCATTGAATGCAGAGAGAAGATGGGTTTTGATCTTTGTGGTGATTGTTATAAATCTCGCTCCAAGCTTCCAGGTCGATTTAATCAACAACACACCTCAGAGCATACGTTCAAGCATATACAACCAAATATGGTTTATAATATACTGATGAGACTAGCCACAGGGCAATTACCGAGCAGTTCTGTTGACATGGATTTATTAGAAAATTTAGAAATTACTGATAGAATACTTTTGGTTGATGATGATGAAGATAACCAAAATGATTCTGAAGACAGCAATTGA 1272 0.3703 MENIEVRNFVDNEYEEIPDSFTCCVCLDMLYKPIVLSCGHMCCFWCVYKSMNCLRESQCPICRHQYYHFPTVCQMLHFLLLKIFSVAYKRRENQILEEEKKSGLYSPQFDPNTCESQAKFGHASIPSSSSIMNSAHNSCNVRTSECTKQSESFAHKEDESIINYEHSSDGKPNNIIETSMEGKNLLQEEFSLQQKISIVDVMCTTCNQLLFHPVVLNCGHVHCETCVIKIADEMLRCQVCQSPHPRGFPKVCLEFDHFLEEQFPIEYGQRKDATELRQIEVNPKAPSSCSLDDGNKGENIDRWSNLKSKVHIGIGCDYCGMFPILGDRYRCIECREKMGFDLCGDCYKSRSKLPGRFNQQHTSEHTFKHIQPNMVYNILMRLATGQLPSSSVDMDLLENLEITDRILLVDDDEDNQNDSEDSN* 424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g1838 423 ProSiteProfiles Zinc finger RING-type profile. 203 241 IPR001841 -
Apr4g1838 423 SUPERFAMILY RING/U-box 15 71 - -
Apr4g1838 423 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 2 90 IPR013083 -
Apr4g1838 423 ProSiteProfiles Zinc finger RING-type profile. 23 63 IPR001841 -
Apr4g1838 423 Pfam Zinc finger, ZZ type 314 351 IPR000433 GO:0008270
Apr4g1838 423 SUPERFAMILY RING/U-box 200 244 - -
Apr4g1838 423 Gene3D - 304 371 IPR043145 -
Apr4g1838 423 SMART ring_2 23 62 IPR001841 -
Apr4g1838 423 SMART ring_2 203 240 IPR001841 -
Apr4g1838 423 PANTHER UNCHARACTERIZED 10 421 - -
Apr4g1838 423 Pfam Zinc finger, C3HC4 type (RING finger) 21 65 - -
Apr4g1838 423 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 188 287 IPR013083 -
Apr4g1838 423 SUPERFAMILY RING/U-box 309 370 - -
Apr4g1838 423 ProSiteProfiles Zinc finger ZZ-type profile. 311 375 IPR000433 GO:0008270
Apr4g1838 423 CDD RING-HC 23 62 - -
Apr4g1838 423 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRT1-LIKE 10 421 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g1838 Apr-Chr4 25413367 25417104 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g1838 8 63 C3H Transcription Factor Family AT1G74990 36.842 1.60e-08 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g1838 - - gmx:100782681 622.854