Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g1812 ATGTCAGCTTCGGAGAGTGGCCGAGAGCTAGCTGGCTTGACCCTTGATGACGTTTTAGCCAACCAGAAGAGACCACCGCCACCACCCAAGAGCCGAACCCTCCTTGACATCATCAAAGAAGACGAGAGCAATAAGAAGGACCGAAGATCTTGGAAAGCTTTCAAGGACAAGCTTCGGCTAAAGCGCGCAGGTTCTGCTTGGACATCTTCTATTCATATCCCGACTTCGGATGTCCCTATCCCTAACTCAAACAACAGAAACTCTTACCAATTCGGTCGCAACTCGGTCCGATTCCAGACTCAATCCGACTCGGACATGTCAACTCAGTACATGACTCGCCAGGTCGATGACCTCGATCCATCCCCGGACGACTCCTATTCAACGGCCAACGCAACGGCGGCCAACGCACCGCTGGCCAAGGCACAATTCTCTCGCCGTAGCTCCACGCGCTTCGCCGGCGACACCTCCGACAACACCGCCGGCACTCTCCGGCCGCAGCTGTCTCGCCGAAACTCCACCAACGTGCAGTCGGAGCCGTACCGGCGGGGGCGCGTGGTGACCTTCCGCGACAGCTTGGACGATGACGAGCCCGACGACGAGGACAAGCCGGGGAGGACGCTGTCGGCGAGGGAGGCGGTGGCGGCGCAGGAGGCAGCGGAAGCGGCAGCGGCGGCGGCGGAAGAAGCTGAGGCAGCGGCGGAGCAGGCTCCGGTGACGATGTCGCTGATGGATTTGTTGGAAGAAACTGATAGGGAAATGGGGCTTGAAGGTTCAAGGTATATATTGAGTGATGATGAAGATTTTGATGAGGACGAAGAAGAAGGAGAAGATGATGAAGATGGAGAAGGTTCTATGGAGCATACTTGCTGCATTTGCATGGTGAGGCATAAGGCTGCGGCTTTTATACCCTGTGGCCACACTTTCTGCAGGATGTGTTCTAGGGAGCTTATGGTTAGTAGGGGTAATTGCCCACTCTGCAACAATTTCATTTTGGAAATTCTTGACATTTTCTGA 1014 0.5533 MSASESGRELAGLTLDDVLANQKRPPPPPKSRTLLDIIKEDESNKKDRRSWKAFKDKLRLKRAGSAWTSSIHIPTSDVPIPNSNNRNSYQFGRNSVRFQTQSDSDMSTQYMTRQVDDLDPSPDDSYSTANATAANAPLAKAQFSRRSSTRFAGDTSDNTAGTLRPQLSRRNSTNVQSEPYRRGRVVTFRDSLDDDEPDDEDKPGRTLSAREAVAAQEAAEAAAAAAEEAEAAAEQAPVTMSLMDLLEETDREMGLEGSRYILSDDEDFDEDEEEGEDDEDGEGSMEHTCCICMVRHKAAAFIPCGHTFCRMCSRELMVSRGNCPLCNNFILEILDIF* 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g1812 337 MobiDBLite consensus disorder prediction 34 49 - -
Apr4g1812 337 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 263 337 IPR013083 -
Apr4g1812 337 CDD RING-HC 289 326 - -
Apr4g1812 337 PANTHER OS01G0917900 PROTEIN 5 337 - -
Apr4g1812 337 Coils Coil 209 236 - -
Apr4g1812 337 MobiDBLite consensus disorder prediction 115 180 - -
Apr4g1812 337 SMART ring_2 289 326 IPR001841 -
Apr4g1812 337 Pfam Zinc finger, C3HC4 type (RING finger) 286 330 - -
Apr4g1812 337 MobiDBLite consensus disorder prediction 65 90 - -
Apr4g1812 337 SUPERFAMILY RING/U-box 288 333 - -
Apr4g1812 337 MobiDBLite consensus disorder prediction 68 90 - -
Apr4g1812 337 ProSiteProfiles Zinc finger RING-type profile. 289 327 IPR001841 -
Apr4g1812 337 PANTHER OS01G0917900 PROTEIN 5 337 - -
Apr4g1812 337 MobiDBLite consensus disorder prediction 115 206 - -
Apr4g1812 337 MobiDBLite consensus disorder prediction 1 49 - -
Apr4g1812 337 MobiDBLite consensus disorder prediction 263 283 - -
Apr4g1812 337 MobiDBLite consensus disorder prediction 259 284 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g1812 Apr-Chr4 24932198 24933754 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g1812 1 337 C3H Transcription Factor Family AT3G07120 35.770 2.11e-57 188
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g1812 - - gmx:100795449 427.557