Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g1768 ATGAACATGCTTCCACTGCAAGTCAGCACAAACCCTCACCCTCATCCTCCATCGCTTCTTCTGAGCAGCTCCAACAATTGTTCCTTCTGTCCCACCCCTCGCTCCCTCTACAACAGCAAAAGCAAGCTCTACCATTTTCGCTCCATCGTTGGAACCCTAAACTTTAGGGTTTTCGCAGTGTCTGGTAACTCCGCATTCAAGATGAACTTGAACGAGTACCTCGTCACTCTCGAGAAGCCCCTCGGCATCCGATTCGCTTTAACTTCTGACGGCAAAATCATCGTCCACTCTCTCACCAAAGGGGGTAATGCGGAGAGGTCCAGGATAATTATGGTGGGCGACACTTTGAAGAAAGCCGGCGATTCGTCTCAGAACAGTCTCGTTGAGATTAAAGACGTTGGAGACACACGGAAAGTGCTAAATGAGCAAACAAATTCTTTTAGCTTGGTTCTTGAGAGGCCTACCAATCCTTTTCCCATTCAACTGCTGCATAAGATGAATGATCTTGAAATAGTTTTTAATAGAGGTCGAGTTCCTGTTGTCACATGGAACAAGACCCTATTGGCATCAAATTTACAATCATCTAGTAAAAGCTGTGGGAATTCTGGATTTTTGATGTTCAACTCAAAGTTTCTCAAACCGAATGGAAGCAAGTTGTTGAACAATCTAAATCAACATACCATCACACATGGTGAGAGAAACTTCTTTACTGAACACAAAACACAACTTGCTTGTGTTTTTAGCGAAAAAGTGTGTGGAGATGGAGATTGGGCTCATGGAAGTTTTCCACTTGAGGAATATATTCAGGCTCTGGATCGTTCCAAGGATGAGATGTACTACAATCACTCCCTTGGTATGCGCTATAGTAAGATTACAGAGCAAATCTATGTGGGATCCTGTATACAAACTGAAGATGATGTTGAAACCTTGTCAAAAGATGAGGGAGTTGCTGCTGTTCTGAACTTCCAAAGTGGAACTGAAGCTGAAAATTGGGGAATCAATGTAAAATCAATCAATGAATCTTGTCAAAGGAATAATATTCTCATGATCAACTATCCTATACGGGAGGGAGATTCTTATGATATGAGAAAAAAGCTGCCATTTTGTGTGGGGCTTTTATTAAGGTTGCTAAGGAAGAATCTTCGTGTTTTCGTGACTTGCACTTCTGGATTTGATCGGTCTCCTGCTTGTGTTATTGCATACCTACATTGGATTACAGATGTTTCCCTTCATGCAGCCTATACTTGGGTCACTGGCATACACACATGCAGACCTGACAGGCCGGCAATTGCATGGGCAACATGGGATCTTATAGCTATGGTTGAAAGTGGCAAACACGATGGACCTCCCACACATGCTGTCACATTTGTGTGGAATGGTCATGAGGGAGAAGATGTAACTTTGGTAGGAGACTTTACTGGTAATTGGAAAGAACCAATCAAGGCAAAGCACCAGGGTGGACCAAGACATGAAGTAGAAGTTAGACTAGCACAAGGAAAGTATTACTACAAATTCATTGTAAATGGACAATGGAAGCATTCAACTGCTTCACCAGCTGAAAGGGATGAAAGGGGAAATGTTAACAATATAATTGTGATTGGTGAAACTGCTAGCGTTCTGCCTTCTGTTCAGCACCAGCAAAAGGATGCCAACGTTATCAAGGTGATTGAAAGGCCTTTGAATGAAAAAGAGCGGTTTATGTTGGCAAAAGCAGCTCGTTGTATTGCTTTCTCTATCTGCCCTATCAGATTAGCTCCCAAATAG 1764 0.4263 MNMLPLQVSTNPHPHPPSLLLSSSNNCSFCPTPRSLYNSKSKLYHFRSIVGTLNFRVFAVSGNSAFKMNLNEYLVTLEKPLGIRFALTSDGKIIVHSLTKGGNAERSRIIMVGDTLKKAGDSSQNSLVEIKDVGDTRKVLNEQTNSFSLVLERPTNPFPIQLLHKMNDLEIVFNRGRVPVVTWNKTLLASNLQSSSKSCGNSGFLMFNSKFLKPNGSKLLNNLNQHTITHGERNFFTEHKTQLACVFSEKVCGDGDWAHGSFPLEEYIQALDRSKDEMYYNHSLGMRYSKITEQIYVGSCIQTEDDVETLSKDEGVAAVLNFQSGTEAENWGINVKSINESCQRNNILMINYPIREGDSYDMRKKLPFCVGLLLRLLRKNLRVFVTCTSGFDRSPACVIAYLHWITDVSLHAAYTWVTGIHTCRPDRPAIAWATWDLIAMVESGKHDGPPTHAVTFVWNGHEGEDVTLVGDFTGNWKEPIKAKHQGGPRHEVEVRLAQGKYYYKFIVNGQWKHSTASPAERDERGNVNNIIVIGETASVLPSVQHQQKDANVIKVIERPLNEKERFMLAKAARCIAFSICPIRLAPK* 588
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g1768 587 CDD E_set_AMPKbeta_like_N 454 533 - -
Apr4g1768 587 Pfam Glycogen recognition site of AMP-activated protein kinase 454 535 IPR032640 -
Apr4g1768 587 ProSiteProfiles Dual specificity protein phosphatase domain profile. 287 443 IPR020422 GO:0006470|GO:0008138
Apr4g1768 587 PANTHER PHOSPHOGLUCAN PHOSPHATASE LSF1, CHLOROPLASTIC 52 587 - -
Apr4g1768 587 SUPERFAMILY PDZ domain-like 78 169 IPR036034 GO:0005515
Apr4g1768 587 Gene3D Protein tyrosine phosphatase superfamily 280 545 IPR029021 -
Apr4g1768 587 CDD DSP_laforin-like 286 432 IPR045204 GO:0019203|GO:0046838
Apr4g1768 587 SUPERFAMILY E set domains 451 534 IPR014756 -
Apr4g1768 587 Gene3D Immunoglobulins 441 537 IPR013783 -
Apr4g1768 587 PANTHER PHOSPHOGLUCAN PHOSPHATASE LSF1, CHLOROPLASTIC 52 587 IPR030066 GO:0005983
Apr4g1768 587 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 277 418 IPR029021 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g1768 139 587 Protein tyrosine phosphatase (PTP) family AT3G01510 69.265 0.0 658
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g1768 - - gmx:100814503 1060.44
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr4g1768 4 23808927 23835408 Apr4g1768 4 23808927 23835408 ECH