Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g1766 ATGGAGTTCACGTCAGGTTTGGCTAAGGTCTTGCAAGTGGGTCACAACCCGGCTATAGGGAGCTCAGCTGGCATGTACCACTTAGGTCGGATGTTCCCCCTTTTGCCACCCCCAGAAGGTCGCGAGAATGAAGATGAACAACAAGTTGTTTCTTCCACTGCTTACATGTTTTGTCGAGATGGATTCGTGTACAACTCAAATAGCGATCGAAGAGCATTGGGGACACCAAATGAGCCTCACGTGGCAAAGCGCCGTCCAAAGGCTGTTTGGAAGCGGGAGTGGTTCTTTAAGGGAGTTTTGGAGCGGAGGGGGAATAAATGTACAGCATGCTTCAGACAGTTCAACAAACTAGAGCACCTTGTGGAGCACATGAGGATCTCATACCATTCGGTTCATGAACCAACCTGTGGCATTTGCAGGAAACACTGTAGGTCGTTTGAGTCTCTAAGGGAACATCTTATAGGTCCATTGCCCAAACAAGAATGCAGAGATATATTTGCATACAGAGGGTGCAAGTTTTGCTTGAAAGTCCTGGACAGCCCTAACACTCGCAGGATCCACCAAGAAAAATGCCAACTCTCCGGAACAAATGCCGGAATAATTGGTCGCTTTTCAAACTTGGGACTTCGTGATAATTTGGCTATTGGAGGTGGAACAAGAGGACCACAAGTAGTTGCACTAGCATGTAAAATGGTTGGAGGTGGCAGTGATGGCTCACTGGATCTCTGTGCAAGAGTATGCTTAATTGATGAGCATGAGAACATCGTCTTCCATTCTTATGTGAAGCCACCAATTCCAGTCACAAACTATAGGTATGAGACAACAGGCATTAGACAAGAATACCTGAGGGATGCAATGCCAATGAGACAAGTTCAGAGGAAGATTCAAGACTTTCTTTGTAATGGAGAACCCATGTGGACAATTCGAGCAAGAGGTGGAAGAGCCAGGATTCTAGTTGGTCATGGCTTGGATCATGACCTTGAATGTCTGCAAATTGAATATCGAGCAGAGAAAATAAGGGACACTGCAAAATACCCTCCACTGATGAAAACGAGTAAGCTGAGCAACTCACTCAAGTACTTAACACAAACATATCTTGGGTATGACATTCAAACTGGGATTCAGGATCCTTATGATGATTGTGTTGCAACGATGAGGCTATACATGAGAATGAGATCCCAAGTACATAAAATAGAGGATTACCCTCTAGTATCTGACCCTCAGAACAGGAATAATTTTGCTTCGTGGAGGCAAAGTGAGCTTGAGAGGATGAGTCCTGAACAGATGCTTGAAATCTCAAGATCTGACTACTACTGCTGGTGCTTGGATTCCTTGTATAATCCCTGA 1347 0.4499 MEFTSGLAKVLQVGHNPAIGSSAGMYHLGRMFPLLPPPEGRENEDEQQVVSSTAYMFCRDGFVYNSNSDRRALGTPNEPHVAKRRPKAVWKREWFFKGVLERRGNKCTACFRQFNKLEHLVEHMRISYHSVHEPTCGICRKHCRSFESLREHLIGPLPKQECRDIFAYRGCKFCLKVLDSPNTRRIHQEKCQLSGTNAGIIGRFSNLGLRDNLAIGGGTRGPQVVALACKMVGGGSDGSLDLCARVCLIDEHENIVFHSYVKPPIPVTNYRYETTGIRQEYLRDAMPMRQVQRKIQDFLCNGEPMWTIRARGGRARILVGHGLDHDLECLQIEYRAEKIRDTAKYPPLMKTSKLSNSLKYLTQTYLGYDIQTGIQDPYDDCVATMRLYMRMRSQVHKIEDYPLVSDPQNRNNFASWRQSELERMSPEQMLEISRSDYYCWCLDSLYNP* 449
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g1766 448 Pfam Exonuclease 243 388 IPR013520 -
Apr4g1766 448 ProSiteProfiles Zinc finger C2H2 type domain profile. 105 134 IPR013087 -
Apr4g1766 448 PANTHER OS02G0709000 PROTEIN 102 444 - -
Apr4g1766 448 CDD REX4_like 225 388 IPR037431 GO:0006364|GO:0008408
Apr4g1766 448 SUPERFAMILY Ribonuclease H-like 237 393 IPR012337 -
Apr4g1766 448 Gene3D - 221 403 IPR036397 GO:0003676
Apr4g1766 448 ProSitePatterns Zinc finger C2H2 type domain signature. 107 129 IPR013087 -
Apr4g1766 448 PANTHER RNA EXONUCLEASE REXO1 / RECO3 FAMILY MEMBER-RELATED 102 444 - -
Apr4g1766 448 SMART exoiiiendus 223 397 IPR013520 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g1766 Apr-Chr4 23533580 23560410 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g1766 105 445 C2H2 Transcription Factor Family AT3G27970 75.439 0.0 567
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g1766 - - aprc:113862359 941.799
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr4g1766 4 23533580 23560410 Apr4g1766 4 23533580 23560410 ECH