Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g1756 ATGGGTTCTGTGGGTAACTCAAATCCGTGGGCACCAAATACTGCTCTGAAGGACTGTTCTCAGGGGATATGCAGCATCTATTGTCCCCAGTGGTGTTACATCATCTACTCCCCTCCCCCTCCTTCAATCACACTTGAAGACGATGACACTGATTCTGGATTTGAATTCTCTCCTCTCATAGTTGCTGTCATAGGAATCCTTGCAAGCACCTTCATTTTGGTCACTTACTATACCATTATCTCAAGGTTCTGCAGACACAGAGGAGGCAGATCCAATGACCCAACTGATCAGGATGATGGCAACACCGAATTCGCCCATGTTCCTTCTTCTTCTAATTCTGGTTTGGATGAAGCTCTCATCAAATCCATCACTGTTTTCAAGTACACCAGAGGTGGTGGGTTGGTGGAGGGTAACGACTGTTCTGTGTGTTTGAGTGAGTTTGAAGAGAATGAGAGCTTAAGATTATTGCCAAAATGCAACCATGCCTTTCATCTCCCTTGTATTGATACTTGGCTCAAATCCCATTCCAGTTGTCCTTTGTGCCGTTCCATTATCTCTTCTTGTCCAAATCCAGCGATGGAACCACCATCAACTGTCAGTATCAATGCCTTGGAATACCAACAAAGGAGTAGTGATGTTGTTGTGATTATTCAGCGCTTGGAATGTCCTCAACAACAAGTTTTGGTTAGTTTTGGTGCTCAAGTTCCACCAAAGTTGCCAGTGGAAGAAGAACAGATAAACAGGCATGACCTTAATTGTAGTGCGAATCAAAGAAGGGTATCTGATATAGGATCATCAACATAG 804 0.4378 MGSVGNSNPWAPNTALKDCSQGICSIYCPQWCYIIYSPPPPSITLEDDDTDSGFEFSPLIVAVIGILASTFILVTYYTIISRFCRHRGGRSNDPTDQDDGNTEFAHVPSSSNSGLDEALIKSITVFKYTRGGGLVEGNDCSVCLSEFEENESLRLLPKCNHAFHLPCIDTWLKSHSSCPLCRSIISSCPNPAMEPPSTVSINALEYQQRSSDVVVIIQRLECPQQQVLVSFGAQVPPKLPVEEEQINRHDLNCSANQRRVSDIGSST* 268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g1756 267 ProSiteProfiles Zinc finger RING-type profile. 140 182 IPR001841 -
Apr4g1756 267 Pfam Ring finger domain 138 182 IPR001841 -
Apr4g1756 267 SUPERFAMILY RING/U-box 134 188 - -
Apr4g1756 267 SMART ring_2 140 181 IPR001841 -
Apr4g1756 267 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 101 187 IPR013083 -
Apr4g1756 267 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 4 199 IPR044675 -
Apr4g1756 267 PANTHER E3 UBIQUITIN-PROTEIN LIGASE OS04G0590900-LIKE 4 199 - -
Apr4g1756 267 MobiDBLite consensus disorder prediction 90 113 - -
Apr4g1756 267 CDD RING-H2_PA-TM-RING 139 182 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g1756 Apr-Chr4 23093860 23095080 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g1756 1 185 C3H Transcription Factor Family AT3G03550 57.073 2.11e-70 219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g1756 - - gmx:102660020 327.405
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr4g1756 4 23093860 23095080 Apr4g1756 4 23093860 23095080 ECH
Apr4g1756 4 23093860 23095080 Apr6g0110 6 1081503 1083774 ECH