Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g1754 ATGGAGTTTAACCCAAACCTCTCTGAGAAAACTCCCTTCCGTTCTGGGATTTTCCCGGAAAACCCCTGCATAAAATCAGAGATCCCAATGCCAGAAGAGAACAACACCTTCATGTACCAAAACAATTTCCACCATTTTCAGCATCATCCCCAGAATGGCCCAAACCATCACCACCTTTCCACAGAGGGTCCTTCCTCCATCATCAACCCATTATTCTCTTTGGCCCCATCTTCTGCAAAGCCATCTTCACACAAATCCACTTACCCCAATGAGTTTCTCAAAGGAGGCCTTACTTTAAACCACCACCCAATGGCTTTTGCACCAAACAGCACCAAAGTTGAACCCATGCATGGCTACCCCAACGCCAACAATGGCCTCTGGGACTTTTCCCTGAAACTTCCCCTTCACAGTGGTGCAAGTGCAAGTTCAAGCTCACACCCTCGTGTGGGACCCTCTCTATCACCATCACTTGGATATGGACTGGTGCAAGTGAAGCCTAGGCTTCAAGAAGAACTCTCATGGGTCGCTGGAAATAATGATCGCTTGGACACTGATCGCAAAGCTCTTGTTGTTGACAAGAAGCAACAGAAGCAGCTGGTTCAGAGGAACAGTAATGGCAAAATTCAGCACAGGTTTACCAACATAATCAAAGGCCAATGGACTGCTGAAGAAGACAGTGTTCTCGTCCAATTGGTGAAGCGCTTCGGGCTCAAAAAATGGTCTCAGATCGCCAGGTTACTGAATGGCAGGGTTGGGAAACAGTGCAGAGAAAGATGGCACAACCATCTCCGGCCAAACATTAGGAAGGACTCATGGAACGAAGAGGAGGACAGAATACTGATTGAAGCTCACATGGAGGTTGGCAACAAATGGGCTGAAATTGCAAGGAGATTGCCTGGGAGGACTGAGAACACCATCAAGAACCATTGGAACGCCACAAAGCGGCGCCAGAGCGCAAAGAGGCACAAGAACAGGCGCAACGGCTCAAAGGGACCGACAACACTGCTTCAAAACTACATCAGGCAAGTCACTGCGAATGAAGAAGCTCAAAAGGAGTTGAAGAAACGCATGAGCAAGACGAGCATGAGGAGTGAGAGTCTCTTCCGGGTTCGGTATGAGAGCTCAGAGGGTGACTTCAGCTCTGAAGATGAAGTTGGGTGGAGTGTGCAGCGCCACGTGGCAAGTGGGGGCTATGTGCCAGTGATGGATGAAGTGGCAAGTGGGTCTGCTGTTGAAGACAGCACAATGGACTATGAGGTTGCAATGGAGATGGTGCCTGAGGTTGAGATGAAGAAGGAAATGGATCTCATGGAGATGATCTATCGAAAGCCTTAA 1335 0.4884 MEFNPNLSEKTPFRSGIFPENPCIKSEIPMPEENNTFMYQNNFHHFQHHPQNGPNHHHLSTEGPSSIINPLFSLAPSSAKPSSHKSTYPNEFLKGGLTLNHHPMAFAPNSTKVEPMHGYPNANNGLWDFSLKLPLHSGASASSSSHPRVGPSLSPSLGYGLVQVKPRLQEELSWVAGNNDRLDTDRKALVVDKKQQKQLVQRNSNGKIQHRFTNIIKGQWTAEEDSVLVQLVKRFGLKKWSQIARLLNGRVGKQCRERWHNHLRPNIRKDSWNEEEDRILIEAHMEVGNKWAEIARRLPGRTENTIKNHWNATKRRQSAKRHKNRRNGSKGPTTLLQNYIRQVTANEEAQKELKKRMSKTSMRSESLFRVRYESSEGDFSSEDEVGWSVQRHVASGGYVPVMDEVASGSAVEDSTMDYEVAMEMVPEVEMKKEMDLMEMIYRKP* 445
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g1754 444 SUPERFAMILY Homeodomain-like 214 310 IPR009057 -
Apr4g1754 444 SMART sant 268 316 IPR001005 -
Apr4g1754 444 SMART sant 216 265 IPR001005 -
Apr4g1754 444 ProSiteProfiles Myb-like domain profile. 264 314 IPR001005 -
Apr4g1754 444 PANTHER MYB PROTEIN-RELATED 183 364 - -
Apr4g1754 444 CDD SANT 271 314 IPR001005 -
Apr4g1754 444 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 268 318 IPR017930 -
Apr4g1754 444 PANTHER MYB DOMAIN PROTEIN 100-RELATED 183 364 - -
Apr4g1754 444 Gene3D - 216 268 - -
Apr4g1754 444 Pfam Myb-like DNA-binding domain 220 277 - -
Apr4g1754 444 CDD SANT 220 263 IPR001005 -
Apr4g1754 444 MobiDBLite consensus disorder prediction 313 328 - -
Apr4g1754 444 Gene3D - 271 313 - -
Apr4g1754 444 Coils Coil 336 356 - -
Apr4g1754 444 ProSiteProfiles Myb-like domain profile. 212 263 IPR001005 -
Apr4g1754 444 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 214 267 IPR017930 -
Apr4g1754 444 MobiDBLite consensus disorder prediction 312 333 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g1754 Apr-Chr4 22980356 22982770 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g1754 213 343 MYB Transcription Factor Family AT4G18770 67.424 2.92e-59 198
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Apr4g1754 Myb_DNA-bind_6 9.1e-19 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g1754 K09422 - gmx:100805329 384.03