Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g1750 ATGGACGAGAAAATGTTCAACACAGCTCAAGATCCCGAAGTGAGAAAGGGGCCATGGACAATGGAAGAAGACTTGATCTTGATCAACTATATCGCGAATCATGGGGAAGGTGTCTGGAACTCTTTAGCCAAAGCTGCTGGACTTAGACGCACCGGAAAGAGTTGTCGCCTTCGGTGGCTAAATTACCTCCGTCCGGATGTTAGAAGAGGGAATATTACACCCGATGAACAGCTTTTGATCATGGAACTTCATGCAAAGTGGGGAAACAGGTGGTCTAAAATTGCTAAGCATCTACCCGGAAGAACTGATAATGAGATCAAGAACTATTGGAGAACAAGGATCCAGAAGCATATGAAGCAAGCTGAGAACTTCCAACAACAGAGTAATTCTGAGACAAATGATCATCATGCAAGCACTAGCCAAGTGTCCACTATGGCTGAGCCCATGGAGACCTACTCTCCACCCTGTTACCAAGGAATGTTAGAGCCATTTTCAACTCAGTACCCCACAATCCCTGAGCAATCTTCTTGTGCCAGCGACAGCAATAACTATTGGACCATGGAGGATATCTGGTCAATGCAATTACTAAACGGGGATTAA 600 0.4517 MDEKMFNTAQDPEVRKGPWTMEEDLILINYIANHGEGVWNSLAKAAGLRRTGKSCRLRWLNYLRPDVRRGNITPDEQLLIMELHAKWGNRWSKIAKHLPGRTDNEIKNYWRTRIQKHMKQAENFQQQSNSETNDHHASTSQVSTMAEPMETYSPPCYQGMLEPFSTQYPTIPEQSSCASDSNNYWTMEDIWSMQLLNGD* 200
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g1750 199 MobiDBLite consensus disorder prediction 120 146 - -
Apr4g1750 199 Pfam Myb-like DNA-binding domain 16 63 IPR001005 -
Apr4g1750 199 Pfam Myb-like DNA-binding domain 69 112 IPR001005 -
Apr4g1750 199 Gene3D - 16 68 - -
Apr4g1750 199 ProSiteProfiles Myb-like domain profile. 11 63 IPR001005 -
Apr4g1750 199 CDD SANT 73 112 IPR001005 -
Apr4g1750 199 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 11 63 IPR017930 -
Apr4g1750 199 CDD SANT 18 63 IPR001005 -
Apr4g1750 199 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 1 196 IPR044676 GO:0003700|GO:0006355|GO:0043565
Apr4g1750 199 Gene3D - 73 144 - -
Apr4g1750 199 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 64 118 IPR017930 -
Apr4g1750 199 SUPERFAMILY Homeodomain-like 13 110 IPR009057 -
Apr4g1750 199 ProSiteProfiles Myb-like domain profile. 64 114 IPR001005 -
Apr4g1750 199 PANTHER TRANSCRIPTION FACTOR MYB21-RELATED 1 196 - -
Apr4g1750 199 SMART sant 68 116 IPR001005 -
Apr4g1750 199 SMART sant 15 65 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g1750 Apr-Chr4 22752556 22755523 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g1750 10 199 MYB Transcription Factor Family AT3G01530 58.854 2.44e-77 229
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Apr4g1750 Myb_DNA-binding 7.7e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g1750 K09422 - gmx:778048 366.311