Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g1742 ATGGGAGTCCACGGTCTCTGGGAACTACTGGCCCCCGTCGGCCGGCGCGTCTCCGTCGAAACCCTTACCGGAAAAACGCTCGCCGTCGACGCGAGCATATGGATGGTGCAGTTCGTGAAGGCGATGCGCGACGAGAAGGGCGAAATGGTTCAAAACGCTCATTTGCTCGGCTTCTTCCGCCGTATTTGCAAGCTTCTGTTCCTACGGACGAAGCCAGTTTTCGTCTTCGACGGCGGAACCCCCGCCCTCAAGCGCCGCACAGTTATCGCCCGCCGCAGACAGCGCGAAAACGCCCAAGCCAAAGTCCGCAAGACTGCGGAGAAATTGCTACTCAATCATTTAAAGGCACTAAGGTTGAAGGAACTGGCTGATGATGTTAAGAACCAGAGGATGAAGCTGGATAGTGATACTAAGGGTCAGAAAAAATCTATTGAGAAGGACTTTGTTGGCTATGATTTGGAAAGAAGTCATCTGAAAGAGCTAGATGAAATGTCTGCAGCTAAATTTGCAGCTAAGGTGGACCGAAATTTTCCAACAATATTGACAAGCTGCAACCAGGAGGAACTTGATGAAATGTTGGCAGCATCTATAGCTGCTGAGGAAAATGGAATACTTGACAGAACAGGAGTGGCCTCTACTGTAATTAATCCTTCAGAAGGGGAATGTTATGCAGATGAAGATACTATGCTGCAATCAGTCAATGCAGAAGTTGATATAGCAGTATTAGCTGCTTTGCCAGAGTCAATGCAGCTTGATATTCTCGCGCAGCTTAAAGGAAAGAAAACAGAAGGACTAGTAAAGGAAGTTGACAACCAGAAACATGAGTATAATGATCGGGGCAAAGGGATTCTGCTCAGTGAAACTGACATCGTAGGGTGTAGCTCAAGACATGATCATGTGACATCAAGAATGTCAAATCAAGACACAATCGATGAAATGTTAGCTGCATCTGTTGCTGCAGAGGAAAATGAAAAAGTAAATAATGCATCAACTTCCATTGGGGCTTCCACTATTGAGGAAGAGGAAGGTGACAATGATGAAAATGAAGAGATGATACTGCCAGCTATGCATGGTGAAGTTGATCCAGCTGTTCTAGCCTCTTTGCCTCCATCAATGCAATTGGACCTTCTTGTTCAGATGAGAGAGCGTCTGATTGCAGAGAACAGACAAAAGTATCAGAGAGTCAAGAAGGATCCTGCAAAATTCTCTGAGCTACAAATACAAGCTTACCTTAAAACTGTTGCTTTTAGACGAGAGATAGATGAAGTACAGAAAGCTGCAGCTGGAGGAGGAGTAGGTGGTGTACAAACTTCGCGGATCGCATCTGAAGCCAACAGAGAATATATATTCTCATCATCTTTTACTGGTGATAAACAGGAACTTACCTCCACTAGGTTAAAGAAAAATAAAGATACACAGCAGAAGATGCCAGGAACACATCCTTCACAGAATCTTGCAAATAGAATTATTGCAGGCAATGATTCTAATCCTTCAGGTGGATTGGTTCTCAATGAACCTAGTGAGCCTGTTAACAGTATTCAGACATATCTTGATGAGAGGGGTCGATTTCGTGTTAGTAGATTGAGGGCTATGGGGATGCGTATGACCCGTGATATACAAAGGAATTTGGATATAATGAAGGAGATTGAGCAGGAAAGAGCATGCGTGAACCAGGCTGCAAATATTGGAACAGTAGAAATTGCAGGCAATAATGATCCATCAGAAAGTTCTGGGATCCAGTTTGTTGGTAATTCACGAGAGGTCAATGTTGACTTAGTTGGAGATAATGGGCAAAATGAACAATCAATGCCTGATAAGGATACTACTATAGATATATCTTTTGAATACGATTGCAATAATAAGTTTACAAATGGTGAGGATGATATTTTTTCCAGTTTAGTAGGAGGAAATCCAGTGGCAATCTTTTCTGCTGATGATACTGCAGAAACAGAGCTACCATCTCATTCTGATTCAGATGGTGGTTGGGAAGAAGGAATTGTTGAAGGTAAGAATAACATTTTTCCTGAACATGATAAGGTAAAATTGAAGTCTTCTGTTGCAGATGAGGATAATATTAACGATGGTGGAGTAGAATGGGAGGAAGGAGATTGCGATGGTGCTAACAGCACCTTACTGTCAGGAAAATTGGCATCTCAAGGTTGGTTGGAGGAGGAGTCTGATTTGCAAGAGGCAATAAGGAGAAGTCTTGAAAGTACAGGGGATGGCAAACTTAAATGCATGTCATCTCTAGATAAGGATTTGAATGCTTATGAGAACAAATTGGATCACAGTTTAGAACATCGAGATGATCTGCATTGTTCTGTCCTAGTGAATTTAAATGAAAACCTTGGGTTCCTGAATCATAAAGATAGTATGAACAGTTTCACTTTGTGTAGGGAACACAGTAATGAACAAAATGAATTACATGAAATTGAAGACAGATATAAAAAGCATGATTATGTGGCTGGAAATAATGCACAAACTTCCCATTTTAATGGAAGTCAGCCAAAGTCATCTGTGACAATAAATTCCAGTAACGCAGAGATATTGATTGACAAACCTTGCGGATTGGACAGACACTCTTGTTCTGAAGATTCAATTTCAGATGCAAATGTAATGTTGAAGGATGAGGTCCCCATGGTTGCAGAGCAATTATTGGATGAACATGATGAAGGTAAAGTGTCTTTCTATTGCAACAATACATCCAAGGTTGATCCACTTGCTGAAACTCAAGAAGAGAAACAGAACTATAGTAAGGAATCTAAAGCATTGAGTAAATCTACTGACAATACCAAACCAGCTATTCTTTTGGTGGAATCATCCTTGAAAGGATCAAAAGAAGACCTTGATATTGAGCCAAAATTGCCTTCAGAGAACAATAATGGAAATTTCTATGAGGAAATAACTAGTAGCCTTGGAAAAGATGCAGTTAAGATGCTGGGAGATTTTCCTGCTCATGCACCTGAGGTTAGACTGGAGGAAGAAATGCAAATTCTTGGTCAAGAATATATCAACCTAGAAAATGAGCAGAGGAAGCTAGAGCGTAATGCAGAATCTGTAAACAGTGAATTGTTCACCGATTGTCAGGAACTACTGCAAATGTTTGGCTTGCCATATATTATTGCTCCAATGGAAGCAGAAGCACAATGTGCTTATCTGGAAATTGCAAAACTAGTTGATGGGGTTGTGACCGATGATTCTGATGTCCTTCTGTTTGGGGCACGCAATGTTTACAAAAATATATTTGATGACCGCAAATACGTAGAGACATACTTCATGGAGGACATTGAAAAGGAGCTTGGATTGACCAAAGAAAAATTAATACGCATGGCTCTTCTTCTTGGGAGTGATTATACTGAAGGTGTAAGCGGGATTGGCATTGTTAATGCTATTGAGGTTGTGAATGCGTTCCCTGAGGAAGATGGCCTCCTGAAATTCCGGCAATGGGTTGAGTCACCAGATCCCACCATCCTTGGAAGATTGGATACTAAAAGTGGATCCAGTAGCAGAAAGAAAGGGTCAAAAGTAGAAGAAAAAATACATTCCTCAAATTGCAATGTTAGCAAGTCTGCATCAGACCAGAACATCCCCCATCCGCAGGAGCAAAAGGAGTTACCAGATTACAACCAAGAAATAAAGCAAATTTTCTTCGATAAGCATAGAAATGTTAGCAAGAATTGGCATATTCCTTCTTCTTTTCCGAGTGAAACAGTTATATCTGCTTACTCTGCTCCACATGTTGATAAGTCAACTGATCCCTTCACGTGGGGAAAGCCAGATCATCTTATTCTTCGCAAATTGTGCTGGGAGAAATTTGGGTGGACTGGCCAAAAAGCAGATGAGTTGCTATTACCTGTGTTAAAGGAATATAACAAACATGAGACTCAACTGCGATTAGAAGCATTTTACAGTTTCAATGAAAGATTTGCAAAATTCCGTAGCAAGAGAATTAAGAAAGCAGTAAAAGGAATCACTGGTCAGCAGCCTTCAGATTTGATAGATGATTCTGCAAAATTGTACAAGAATAGGAAGGATGGGAAAGAACCTGAGGATAGCAAATTGGAGATTTCAAGCAGAACAGAGGAAAGTCTTGAAGGTAGGGAATCAAAAATAAAGCAATCAAGGAAAAGGAAGGATGATGGGGATACTGTTGCTAAAGTGCAGTCAAAGAAAAAGAAAATCATTGATGATCCATCTTCTGCACCTGGTACATCTGAGGTGGAGAATTTACAGCCGTGTATGCAGACAAAAGAGCAGCGTGATGATGAGGCAATGATTTGGAATAGAAGGGGCAGAGGAAGAAGTAGTAGAGGTACGGGAATGAAAAAAGGAAGGAAGAAGAAAAGTCATGCTGAAACCTCATCTAGTAGTAGTGACATTGAAGATCATGAGCCAATAGTGCATGCAGATAAGGTTCCAACAGAAGTGCGAAGGTCAATGCGATGTCGGAAACCTGTCAACTATTCTTTCGAAGACCTTGAAATTGAAGATGCTGATGATTCATTTGATCAGAGCAATCAGACTTGTTTTCTTGAAGTGCCAATAGAAGAGAATTTATCTCATATTCATGGTGCATGCGATGATTTTGCAACTGAGTTTAGCATGGGGAAAGAATGCAGTGCAAAGAATTTTCCTCTAAAGGATAACTTGCCCAGTCATCTTAAGTCAGAAGGTTGGTTTCACACTGATGCTGGTCAAACTAGTCATCCCGGGACTGGCAACCACGTGTCTTCTGATGACTACCTTAAAATGGGAGGTGGATTCTGTTTAGATGATAGTGAGACAGGTAACCAGCATAATTCAATTGATTGTGTGCATACTGCAACAGTGAATTATAGTGCTGAATTTCCACGTTCTGATTTTTTGGATGAAACTGACCGTGATAAAAATAATTCAGATAGATTGTTGTCTGACACTGAAAAGGCTGATAATGGAATACAAGATGGAGCGGCCTCTTGTAAATTCAATAAAGAATCAAATGACCTTGTAAATGCTAGTAGTTATGATCATTCTTACATAGGGGACTCGATACTAGAGAATGCTCATAACAATAGTGGAGCCTCCACTGGAGCTTTTAGTGCTATGCCGTTTTTGAGAAGAAGAAGGAAGAACTGA 5115 0.409 MGVHGLWELLAPVGRRVSVETLTGKTLAVDASIWMVQFVKAMRDEKGEMVQNAHLLGFFRRICKLLFLRTKPVFVFDGGTPALKRRTVIARRRQRENAQAKVRKTAEKLLLNHLKALRLKELADDVKNQRMKLDSDTKGQKKSIEKDFVGYDLERSHLKELDEMSAAKFAAKVDRNFPTILTSCNQEELDEMLAASIAAEENGILDRTGVASTVINPSEGECYADEDTMLQSVNAEVDIAVLAALPESMQLDILAQLKGKKTEGLVKEVDNQKHEYNDRGKGILLSETDIVGCSSRHDHVTSRMSNQDTIDEMLAASVAAEENEKVNNASTSIGASTIEEEEGDNDENEEMILPAMHGEVDPAVLASLPPSMQLDLLVQMRERLIAENRQKYQRVKKDPAKFSELQIQAYLKTVAFRREIDEVQKAAAGGGVGGVQTSRIASEANREYIFSSSFTGDKQELTSTRLKKNKDTQQKMPGTHPSQNLANRIIAGNDSNPSGGLVLNEPSEPVNSIQTYLDERGRFRVSRLRAMGMRMTRDIQRNLDIMKEIEQERACVNQAANIGTVEIAGNNDPSESSGIQFVGNSREVNVDLVGDNGQNEQSMPDKDTTIDISFEYDCNNKFTNGEDDIFSSLVGGNPVAIFSADDTAETELPSHSDSDGGWEEGIVEGKNNIFPEHDKVKLKSSVADEDNINDGGVEWEEGDCDGANSTLLSGKLASQGWLEEESDLQEAIRRSLESTGDGKLKCMSSLDKDLNAYENKLDHSLEHRDDLHCSVLVNLNENLGFLNHKDSMNSFTLCREHSNEQNELHEIEDRYKKHDYVAGNNAQTSHFNGSQPKSSVTINSSNAEILIDKPCGLDRHSCSEDSISDANVMLKDEVPMVAEQLLDEHDEGKVSFYCNNTSKVDPLAETQEEKQNYSKESKALSKSTDNTKPAILLVESSLKGSKEDLDIEPKLPSENNNGNFYEEITSSLGKDAVKMLGDFPAHAPEVRLEEEMQILGQEYINLENEQRKLERNAESVNSELFTDCQELLQMFGLPYIIAPMEAEAQCAYLEIAKLVDGVVTDDSDVLLFGARNVYKNIFDDRKYVETYFMEDIEKELGLTKEKLIRMALLLGSDYTEGVSGIGIVNAIEVVNAFPEEDGLLKFRQWVESPDPTILGRLDTKSGSSSRKKGSKVEEKIHSSNCNVSKSASDQNIPHPQEQKELPDYNQEIKQIFFDKHRNVSKNWHIPSSFPSETVISAYSAPHVDKSTDPFTWGKPDHLILRKLCWEKFGWTGQKADELLLPVLKEYNKHETQLRLEAFYSFNERFAKFRSKRIKKAVKGITGQQPSDLIDDSAKLYKNRKDGKEPEDSKLEISSRTEESLEGRESKIKQSRKRKDDGDTVAKVQSKKKKIIDDPSSAPGTSEVENLQPCMQTKEQRDDEAMIWNRRGRGRSSRGTGMKKGRKKKSHAETSSSSSDIEDHEPIVHADKVPTEVRRSMRCRKPVNYSFEDLEIEDADDSFDQSNQTCFLEVPIEENLSHIHGACDDFATEFSMGKECSAKNFPLKDNLPSHLKSEGWFHTDAGQTSHPGTGNHVSSDDYLKMGGGFCLDDSETGNQHNSIDCVHTATVNYSAEFPRSDFLDETDRDKNNSDRLLSDTEKADNGIQDGAASCKFNKESNDLVNASSYDHSYIGDSILENAHNNSGASTGAFSAMPFLRRRRKN* 1705
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g1742 1704 Gene3D - 1102 1217 - -
Apr4g1742 1704 MobiDBLite consensus disorder prediction 1160 1204 - -
Apr4g1742 1704 ProSitePatterns XPG protein signature 2. 1036 1050 IPR019974 GO:0016788
Apr4g1742 1704 Coils Coil 907 927 - -
Apr4g1742 1704 SMART xpgineu 1033 1102 IPR006086 GO:0004518
Apr4g1742 1704 PANTHER DNA REPAIR PROTEIN COMPLEMENTING XP-G CELLS 1 260 - -
Apr4g1742 1704 PANTHER DNA REPAIR PROTEIN COMPLEMENTING XP-G CELLS 257 1704 - -
Apr4g1742 1704 CDD PIN_XPG_RAD2 1019 1103 - -
Apr4g1742 1704 PANTHER DNA REPAIR PROTEIN COMPLEMENTING XP-G CELLS-RELATED 257 1704 - -
Apr4g1742 1704 PANTHER DNA REPAIR PROTEIN COMPLEMENTING XP-G CELLS-RELATED 1 260 - -
Apr4g1742 1704 MobiDBLite consensus disorder prediction 1415 1430 - -
Apr4g1742 1704 SUPERFAMILY 5' to 3' exonuclease, C-terminal subdomain 1102 1312 IPR036279 -
Apr4g1742 1704 MobiDBLite consensus disorder prediction 1180 1199 - -
Apr4g1742 1704 Pfam XPG N-terminal domain 1 97 IPR006085 GO:0004518
Apr4g1742 1704 Gene3D - 1 149 - -
Apr4g1742 1704 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 24 38 IPR006084 -
Apr4g1742 1704 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 72 91 IPR006084 -
Apr4g1742 1704 MobiDBLite consensus disorder prediction 907 930 - -
Apr4g1742 1704 MobiDBLite consensus disorder prediction 1341 1397 - -
Apr4g1742 1704 MobiDBLite consensus disorder prediction 1621 1643 - -
Apr4g1742 1704 MobiDBLite consensus disorder prediction 1341 1471 - -
Apr4g1742 1704 SUPERFAMILY PIN domain-like 2 1117 IPR029060 -
Apr4g1742 1704 Coils Coil 989 1023 - -
Apr4g1742 1704 MobiDBLite consensus disorder prediction 1621 1641 - -
Apr4g1742 1704 Gene3D - 985 1101 - -
Apr4g1742 1704 SMART HhH_4 1104 1137 IPR008918 GO:0003677|GO:0003824
Apr4g1742 1704 Pfam Ubiquitin binding region 359 384 IPR025527 -
Apr4g1742 1704 Pfam Ubiquitin binding region 234 256 IPR025527 -
Apr4g1742 1704 Pfam XPG I-region 1036 1117 IPR006086 GO:0004518
Apr4g1742 1704 MobiDBLite consensus disorder prediction 1165 1179 - -
Apr4g1742 1704 PRINTS Xeroderma pigmentosum group G protein signature 2 19 IPR001044 GO:0003697|GO:0004519|GO:0005634|GO:0006289
Apr4g1742 1704 PRINTS Xeroderma pigmentosum group G protein signature 54 77 IPR001044 GO:0003697|GO:0004519|GO:0005634|GO:0006289
Apr4g1742 1704 PRINTS Xeroderma pigmentosum group G protein signature 96 118 IPR001044 GO:0003697|GO:0004519|GO:0005634|GO:0006289
Apr4g1742 1704 MobiDBLite consensus disorder prediction 1435 1449 - -
Apr4g1742 1704 CDD H3TH_XPG 1105 1249 - -
Apr4g1742 1704 SMART xpgn3 1 98 IPR006085 GO:0004518
Apr4g1742 1704 MobiDBLite consensus disorder prediction 1450 1471 - -
Apr4g1742 1704 CDD PIN_XPG_RAD2 2 92 - -
Apr4g1742 1704 ProSitePatterns XPG protein signature 1. 70 84 IPR019974 GO:0016788
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g1742 Apr-Chr4 22284088 22301868 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g1742 1027 1134 Core DNA Replication Machinery Family AT5G26680 37.838 1.37e-13 73.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g1742 K10846 - gmx:100820295 2502.63
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr4g1742 4 22284088 22301868 Apr4g1742 4 22284088 22301868 ECH