Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g1729 ATGCCTCCAAAGAAGAAGAAACCCAATCCACAACCTTCCAAGTTTGGCATTCAGCACTTCTTCGATCGCGCCTCCCAGAAGCAGTCGCAACCCCCTCCCACCAATGCAGTGCCTAACGCCGCCGAAGACCCCACTCCGGACACGGCCCCTAAGCGCTTCAAATTCTCGCCTGGCATGTTGGTCAAGCAGAGCCAAGATGACGGGGTTGACGAGGTTACTTGGAAGATTTCCCCGGTTAACGAAAGGCTTCAAGCAGTTTCAAAACACGCGCCTGAAATAATTAAAGCTTTAGCTGATTCTTCCAAAATGAACTTGTCGCCGATTCGCAACTGCTCCGAAGACCAGACTTCTCAGGATAAAGACGGAAAACTTCCTTCACTCACTCCCAAAGCAAAAGCTCTGTTGCCAATGAGTAAATTGGGCCAGAAAAGGATAAATCTGGACCGAGACGTGGATAATAACGTGAGCGTGGGTAACTCTGGAGGACAGAGTCCCTTCAGAACTCCGCCATCTTTGTCTTGTTGCCCTGATAAGGTGCAGCTTGCCAAGGGAATTCAACACCATGGACCGTGTGACCAGCCTTTTTTAAGACAGCACAAAAAGGCATTGCTTGAACTGTTAGATCAAGTTGAAGATGCCATTGCTGTTGATGATGATGCTACAGTGTGCACTAACCATACTTATTTGTACAAATCTCAAGATCTAATTGCTAATGAGCTCCCTGTCAAAGCCAATCCTGTAATAGAAAGGACAAAATCACATTTATGTAGAGGGGCCATTAGTGTTTTCTCCAGTTGTAATTATTTGGTTTTGGAGGTATCTGAAAAACAAATGCCTGATGATTCATCCGCTGCTCAATGCCCATACAAGGTGCTTCGTTTGCTAAATGAACAAACTGGAGAAGAGTGGGCTGTAAACTTAAAGGATGAATGGTCTTACAGTGTAATTGCTCCTGGAGATACTGTAAACATAATTGGTCAATTTGGTGAAGGGGGACATTGTGATGTTGATCATGATAATAATTTTTTGATTGTACACCCAGATATTCTGTTGCCTGGAACACGGGTTGCTGCAAGTTTTAGTTGCCAAAGGAGAGCTGTCTTAGATGAGAGGATAAAACACAATGAAAACTCGATTGCCGCATTAACTGGAACCTTGCTTCACCAAATTTTTCAGGCTGGGCTTACAAAAGAATGTCCTACAGTAAATTTCATGCAAGATTATGCAGAAGTGGTGTTACAGAGAAACACTGAAAGTTTGTATGCGTGTGGAGTAAATGAAAATGATGTTCGCAAAACTTTGAGTGAGGATATCCCTAGAATATTAAGTTGGATCATGCAGTTCAAAAATATGAAGGAAAAAAATGATCCTAGTGTCAATTTTGGATTTGCAGATGGGCTGAAGAATCTTTGCATATCAGAGGTGATTGATATTGAAGAGATGGCATGGGCTCCAAAGTATGGTTTGAAAGGGATGATTGATGCTTCAGTCAAAGTGAAATTTCAGTCGCAAAAAGATGAGCCAGAGGAGAAGATCATGCCACTAGAGTTCAAAACTGGAAAAACACCAAATAGCCAGTCATCAGTGGAACATGATGCCCAAGTAATTTTGTACACTCTCCTGATGTCTGAAAGGTACCAGAAGACTATTGAGTCTGGTCTTCTGTATTATCTCCAATCTGATCAGACACGGGGCATTGTGGTTCAAAGATCTGACTTAATTGGGCTAATAATGCGACGTAATGAACTAGCCAGTGATATTCTTAGGGCATTAACTTTGCAACAACTGTCTCCAATGTTACAGAGTCCTAGCATATGCAGAGGTTGTCGCCATCTTAATATTTGTAACATTTATCATAAGGCACATGGTGGAAGCTCAGAGAGCAGTGGGTTGGGAGAAATGTTTGATTCTCGTACTCATCACATGACAACTTCATATTCGAAGTTCCTCTGCCATTGGGATCGTTTGATTGATTTAGAAGCCAAAGAGACAGAGCTTTTAAAGAAAGAGGTGTGGCGATCTTATAGTGTGAAGAGTCCAAACAGTGGTGGCCTTTCTTCGCTTGTTCTTGATGCTTCGCAAGGAATACCGCATCACAAAGATCTCAAAGATCATCGCTTCATTTATCGTTTCATACGAGATACTTCTACCCTTTCTGCAGTTCCTGATTCCTCTTCTAGTGCATCCTTGAAAAATGATTTAGATTGCATGCTTCGAAGTGGAGATCATGTGATATTGAGTAATGAATCTAGCCATCAAATTATTACAAAGGGGGTCATATCTGATATTAGCCAGATCCATGTATCTGTTTCTTTTTCTAAGCGATTACGAATACCCGGGAGTTCTTCCACTGCACATGATCTTGTTCAGCAGGTCTGGAGAATTGATAAGGATGAAGTTGTGACTTCATTTGCCATTATGAGGTTTAATCTTGTACAACTTTTTCTACAAAATGATCAAAGTGCTCATCTGCGGAGGATGATTGTTGACCTTGAGGCTCCTAGATTTGACACTGGATCTTTAGTTAGCCAGGATCCAGCAATATCCTATGTTTGGTCGGAGAAGAGTTTGAATGATGATCAACGTCGAGCAATTCTCAAGATACTTACGGCAAAAGATTATGCACTTATATTAGGGATGCCTGGAACAGGGAAGACATCCACCATGGTCCATGCTGTGAAAGCCTTGTTGATTAGAGGAACATCCATTTTACTTACAGCCTATACTAATTCGGCTGTTGATAATTTGCTCATCAAATTAAAAGCACAGGGCATTGATTTTGTACGTATTGGAAGAGATGATGTAGTGAATGAGGAGGTCAGAGGGCACTGCCTCTCAGCAACAAATGTGCATAGTGTTGAAGATATAAAAACAAGGTTAGAACTAGTCAAAGTTGTTGCAGTTACTTGTCTTGGCATTTCTAGTCCGTTGCTTGGCAACATGAGATTTGATGTATGCATCATGGATGAAGCTGGACAGACAACTCTACCAGTGTCCTTGGGCCCTCTAACATTTGCTTCAACGTTTGTACTTGTTGGGGATCATTATCAACTGCCACCACTTGTGCAGAGTGCAGAGGCTCGAGAGAATGGCATGGGGATAAGTTTGTTCTGTAGGCTCTCAGAAGCACATCCAGAGGCTATTTTAGCTTTACAGAGTCAGTATCGTATGTGTCAGGGCATTATGGACCTTTCAAATGCCTTGATATATGGTGAAAGATTGAGGTGTGGTTCATCTGAGATAGCTAATGCAAAACTTGAGTTTTCTGGCTTAAACTGTGGTTTGCCTTGGCTAGAAGATGTTTTGAATCCTCGAAGGCCTGTGATATTTATCGATACTGACAAGTTGCCTGCTTTAGAGGAAAGAGATCAGAAGATTGTAAATAATCCTATTGAAGCTCACATAATTGCTGAGGTTGCAAAGGAATTGGTAAAAAATGGAATTGGAAGAGAACACATTGGCATTATTACTCCCTATAATTCACAAGCAAACCTTATCCGGCATGCTGCTTGCATGACATCCTTGGAAATACACACCATTGATAAATACCAGGGCAGGGATAAGGACTGTATTTTAGTATCTTTTGTAAGGTCTAGTGAAAACCCAACAAGCTGTGCTGCTTCTCTGCTTGGAGACTGGCACAGGATAAATGTGGCTCTTACTCGTGCTAAGAGAAAGTTGATCATGGTGGGGTCTCGGAGAACACTCTTAAAGGTTCCACTATTGAAACTTCTCATTAAGAAAGTTGAGGAACAGTCTGGAATATTAAGTGTGACTAAGAAGGATATCTGTCGTAAAGGGGAGCTCAAGAGATGTACACAAATTAGATAA 3831 0.4169 MPPKKKKPNPQPSKFGIQHFFDRASQKQSQPPPTNAVPNAAEDPTPDTAPKRFKFSPGMLVKQSQDDGVDEVTWKISPVNERLQAVSKHAPEIIKALADSSKMNLSPIRNCSEDQTSQDKDGKLPSLTPKAKALLPMSKLGQKRINLDRDVDNNVSVGNSGGQSPFRTPPSLSCCPDKVQLAKGIQHHGPCDQPFLRQHKKALLELLDQVEDAIAVDDDATVCTNHTYLYKSQDLIANELPVKANPVIERTKSHLCRGAISVFSSCNYLVLEVSEKQMPDDSSAAQCPYKVLRLLNEQTGEEWAVNLKDEWSYSVIAPGDTVNIIGQFGEGGHCDVDHDNNFLIVHPDILLPGTRVAASFSCQRRAVLDERIKHNENSIAALTGTLLHQIFQAGLTKECPTVNFMQDYAEVVLQRNTESLYACGVNENDVRKTLSEDIPRILSWIMQFKNMKEKNDPSVNFGFADGLKNLCISEVIDIEEMAWAPKYGLKGMIDASVKVKFQSQKDEPEEKIMPLEFKTGKTPNSQSSVEHDAQVILYTLLMSERYQKTIESGLLYYLQSDQTRGIVVQRSDLIGLIMRRNELASDILRALTLQQLSPMLQSPSICRGCRHLNICNIYHKAHGGSSESSGLGEMFDSRTHHMTTSYSKFLCHWDRLIDLEAKETELLKKEVWRSYSVKSPNSGGLSSLVLDASQGIPHHKDLKDHRFIYRFIRDTSTLSAVPDSSSSASLKNDLDCMLRSGDHVILSNESSHQIITKGVISDISQIHVSVSFSKRLRIPGSSSTAHDLVQQVWRIDKDEVVTSFAIMRFNLVQLFLQNDQSAHLRRMIVDLEAPRFDTGSLVSQDPAISYVWSEKSLNDDQRRAILKILTAKDYALILGMPGTGKTSTMVHAVKALLIRGTSILLTAYTNSAVDNLLIKLKAQGIDFVRIGRDDVVNEEVRGHCLSATNVHSVEDIKTRLELVKVVAVTCLGISSPLLGNMRFDVCIMDEAGQTTLPVSLGPLTFASTFVLVGDHYQLPPLVQSAEARENGMGISLFCRLSEAHPEAILALQSQYRMCQGIMDLSNALIYGERLRCGSSEIANAKLEFSGLNCGLPWLEDVLNPRRPVIFIDTDKLPALEERDQKIVNNPIEAHIIAEVAKELVKNGIGREHIGIITPYNSQANLIRHAACMTSLEIHTIDKYQGRDKDCILVSFVRSSENPTSCAASLLGDWHRINVALTRAKRKLIMVGSRRTLLKVPLLKLLIKKVEEQSGILSVTKKDICRKGELKRCTQIR* 1277
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g1729 1276 Pfam AAA domain 1034 1233 IPR041679 -
Apr4g1729 1276 Pfam DNA replication factor Dna2 297 499 IPR014808 -
Apr4g1729 1276 Gene3D - 1055 1267 IPR027417 -
Apr4g1729 1276 Gene3D - 785 1054 IPR027417 -
Apr4g1729 1276 PANTHER DNA REPLICATION ATP-DEPENDENT HELICASE/NUCLEASE DNA2 135 1251 IPR026851 GO:0017108|GO:0017116|GO:0033567
Apr4g1729 1276 Pfam AAA domain 857 947 IPR041677 GO:0004386
Apr4g1729 1276 Pfam AAA domain 958 1024 IPR041677 GO:0004386
Apr4g1729 1276 MobiDBLite consensus disorder prediction 105 130 - -
Apr4g1729 1276 Gene3D - 353 616 IPR011604 -
Apr4g1729 1276 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 856 1242 IPR027417 -
Apr4g1729 1276 MobiDBLite consensus disorder prediction 1 68 - -
Apr4g1729 1276 PANTHER DNA2/NAM7 HELICASE FAMILY 135 1251 IPR045055 -
Apr4g1729 1276 CDD DEXXQc_DNA2 856 1056 - -
Apr4g1729 1276 CDD SF1_C_Upf1 1057 1235 IPR041679 -
Apr4g1729 1276 MobiDBLite consensus disorder prediction 22 36 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g1729 Apr-Chr4 22050150 22087232 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g1729 1 998 Core DNA Replication Machinery Family AT1G08840 54.041 0.0 1064
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g1729 K10742 - gmx:100799415 1910.96