Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g1694 ATGTCACTAACTATCTTCTTCTTTGTCTTGCAATTGTTTGCAAGGTCAAGGGTACTATTAGCTACTGAAGGAAGAGACCATTGTTTAATCACCCCAAAGCCCATTATGAACATTGGTGCTGTGCTTGATTTGTATTCACTAATGGGAAAGCAACAGAAGATAGCCATGGAAATTGCAATAGAAGAATTCAATCTCTTGAGTTGTTCCAAGCTGGATTTGAATGTACAAAATTCTCTTGGGAATTCGGCTCGAGCAATTGCTAGTGCTACGGATCTCGCTGAGAGCAAGCAAGTCCAAGCTATCATAGGAACATTAACACAAAACGAAGCAACTCTGGCACGCGAATTAAATGACTACATGAAGACCATTCCAATATTCTCTCTCAGTTCCCCAACAACAAGCAAAGATTTATTATCTCCTCAATTGCCACACGTCATTAATTTGGGAGATGATATGAGGTTTCACATGCAATGCATTGCAGCAATTGTAGGAGAATTCAAATGGCAAAAGGTGACAATAATCTATGAAGTTAACAACGGGTTTTCTTATGATCCAGGAATACTACTTGAACTCTCCTATTCTCTTAGACTTGTTGGTTCTGAGATTGATAACCACTTATCTTTGCCTTCTTTATCCACTCTATCTGACCCAAAAGCTACAATTGAACATGAGCTTAATAAGCTCAAAAGCAAGAGTAATAGGGTCTTCTTGATCGTGCAATCTTCTTTAGAGTTGTCTAGTATACTTTTTGAGAAAGCAAAGCAAATGGGTTTGATGGAAAAAGGTTCTGTGTGGGTTATCCCAAATGTGGTTGCCGGCCTTCTTGATTCAGTTAACTCTTCTGTTATCTCTAACATGCAAGGAGTTATTGGATTTAAGACACACTTCAACGAAACGAGCGAAGCATTTAGAAAGTTCAAGCTCAAATTTCGAACCAGATTTGCACTGGAGTTTCCTGAAGAAGAGAACATCAACCCAAGTTTCTTTGCACTTCAATCATATGATACAACCTGGGATATTGCTAAAGCTGCAAATAAATCACAAGGGAAGTTGACCCTTGATGAATTATTCAAAAGTAATATCTCCAGGAATAGCAAATTACGACAATCACCACCCTTCAATATAATTAATGTGATAGGGAAAAGTTACAAAGAGTTGGCATTATGGTCTCCAACACTAGGTTTCTCAAAGAACTTTGTCACCCATCACTTACAGAATATGAAAACGAATAATGTTTCTAATGGAGTTTTGAGCACAGTTTATTGGCCAGGAGGCTTACAATTTGTTCCTAAAGGATGGACTGACAACACTAAGGAAAGGGCAATGCAAATAGCAGTACCTTCAGAAGGTGCCTTTAGTCAGTTTGTGAATGTGACATATGATCAGAGCAAGAATACAACTTCCATTACTGGTTTCTCAATAGATGTCTTTAAAGCAGCCGTTAATAATCTTCCTTATGACTTGAAATACGAGTTCATTCCATTTAATGGATCTTATGACGAAATGGTTGGTCGAGTTCATAATAAGACATTGGATGCTGCTGTGGGGGATACATCAATAATGGCTTATAGATATCATTTAGTCGACTTCTCACAACCATATATTGAATCCGGCCTCGACATGGTAGTTACTGAGCAGTCAGCTAAACCTAATGAAACATGGATTTTTATGGATGCCTTTACAAAAGAGATGTGGTTGATGATGATAGCATTGCACATTTTTGTGGGGTTTGTCATTTGGTTGATTGAACGACAAGTTAATGAAGAACTACAGGGATTGGGGTCCATGCTTTGGTTTTTAGTAACTGTAATTTTCTATGCACACAGAGAATCAATTAGAAGCCCCTTGGCTCGAACTGTGCTAGCACCATGGTTATTTGTTATCCTCATTGCAACAAGTAGTTTCACAGCAAGTTTGACATCCATGATGACTGTTTCTCAACTACAGCCATCAGTATTAGATATTGAAACCCTTCAGAAAACAAATTCTCCGGTTGGTTGTGATGGAAATTCGTTTATTGTGAAGTATTTGACTGATGTGCTAAAATTCAAGCATGAGAACATTAGGAAAATTAAATCCATAAGTGATTACCCTGCTGCCTTTCAGAACAAGGATATCAAAGCCGCTTTCTTTGTTTCACCTCATGCTAAAGTATTTTTGGCAATGTACTCATGTAAGGGCTTCATCAAAGCAGGGAACACTTTGAAGCTTGGTGGCTTTGGTTTTGTATTTCCAAAGGGCTCCAATCTGGCTATTGACATATCTGAGGCATTGCTTAAAGTGATAGAGAGTGGAGAAATAGAGCAACTAGAAAAATATATGCTATCAAGGGGAACCAAAGCCAATTGTTCTCCTTCAGAGAAAAAGGAAAAAGATGGGTCTTCAATAGGACTTCAGCCTTTCCTTGGCCTATTTTGCATTTGTTCTACTATTGCTATTTTGGCATTGTTGTATAATATGATTTGTTTGTTCATGAAGAATGTAGAGACCTTGACTAGTCACATACACATAACATTAACACAAGTAAGGAGAATATGGAGATGGATAACCACATATTTTGCTAGTAGTTGTTCAAGACTCCAATCAAGAAGTAAGAGAAGAGTAAGTACTACCACAGTAACAAGAAATGCAGAGGAGACAGTCACTAATAGTCAACAAAGCCCAGTGGTTGTTGATATTGTCGATATAGTATTGGCTGCTCATCCTTCCTGA 2712 0.3802 MSLTIFFFVLQLFARSRVLLATEGRDHCLITPKPIMNIGAVLDLYSLMGKQQKIAMEIAIEEFNLLSCSKLDLNVQNSLGNSARAIASATDLAESKQVQAIIGTLTQNEATLARELNDYMKTIPIFSLSSPTTSKDLLSPQLPHVINLGDDMRFHMQCIAAIVGEFKWQKVTIIYEVNNGFSYDPGILLELSYSLRLVGSEIDNHLSLPSLSTLSDPKATIEHELNKLKSKSNRVFLIVQSSLELSSILFEKAKQMGLMEKGSVWVIPNVVAGLLDSVNSSVISNMQGVIGFKTHFNETSEAFRKFKLKFRTRFALEFPEEENINPSFFALQSYDTTWDIAKAANKSQGKLTLDELFKSNISRNSKLRQSPPFNIINVIGKSYKELALWSPTLGFSKNFVTHHLQNMKTNNVSNGVLSTVYWPGGLQFVPKGWTDNTKERAMQIAVPSEGAFSQFVNVTYDQSKNTTSITGFSIDVFKAAVNNLPYDLKYEFIPFNGSYDEMVGRVHNKTLDAAVGDTSIMAYRYHLVDFSQPYIESGLDMVVTEQSAKPNETWIFMDAFTKEMWLMMIALHIFVGFVIWLIERQVNEELQGLGSMLWFLVTVIFYAHRESIRSPLARTVLAPWLFVILIATSSFTASLTSMMTVSQLQPSVLDIETLQKTNSPVGCDGNSFIVKYLTDVLKFKHENIRKIKSISDYPAAFQNKDIKAAFFVSPHAKVFLAMYSCKGFIKAGNTLKLGGFGFVFPKGSNLAIDISEALLKVIESGEIEQLEKYMLSRGTKANCSPSEKKEKDGSSIGLQPFLGLFCICSTIAILALLYNMICLFMKNVETLTSHIHITLTQVRRIWRWITTYFASSCSRLQSRSKRRVSTTTVTRNAEETVTNSQQSPVVVDIVDIVLAAHPS* 904
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g1694 903 Pfam Bacterial extracellular solute-binding proteins, family 3 466 772 IPR001638 -
Apr4g1694 903 SUPERFAMILY Periplasmic binding protein-like II 416 772 - -
Apr4g1694 903 Gene3D - 554 695 - -
Apr4g1694 903 CDD GluR_Plant 443 775 - -
Apr4g1694 903 Gene3D - 444 553 - -
Apr4g1694 903 Pfam Ligand-gated ion channel 773 808 IPR001320 GO:0015276|GO:0016020
Apr4g1694 903 Gene3D - 31 154 - -
Apr4g1694 903 PANTHER GLUTAMATE RECEPTOR 32 865 - -
Apr4g1694 903 PIRSF IGluLR_plant 1 368 IPR017103 -
Apr4g1694 903 PIRSF IGluLR_plant 349 890 IPR017103 -
Apr4g1694 903 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 32 865 - -
Apr4g1694 903 Pfam Receptor family ligand binding region 53 362 IPR001828 -
Apr4g1694 903 Gene3D - 155 325 - -
Apr4g1694 903 SMART GluR_14 443 777 IPR001320 GO:0015276|GO:0016020
Apr4g1694 903 SUPERFAMILY Periplasmic binding protein-like I 35 433 IPR028082 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g1694 Apr-Chr4 20480662 20486090 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g1694 36 853 Ion Channels AT2G29110 30.173 2.41e-110 360
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g1694 - - gmx:100778941 1295.8