Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g1648 ATGGGCACAGTAGAAATGATCATTGCATTTCACATGAAAGCTTTGGTCTTTTTCCTTTGGCTGTTTGTCCCCTCATTGGGCAAAGACTTGCTAAGCTGTGAGACAACATCACCTGATGCCTCTGGCTACCATTGCATTGAAAATGGGTCACAAAGCCAATGTGCAACATTTGCACTCTTTCTCACCAACTCTTACTACTCATCACTCTCCAACCTCTCCTCTTACTTGGGACTAAACAGGCTTTTAATAGCACAAGCAAATGGGTTCTCTGCAGGCACTGAGTTCCTCTCCCAGGACCACCCTCTTCTGATACCAATTGAATGCAAATGCAAAGGTGGATTCTTTCAGGCTGAGTTAACCAAAACTACCATCAAAGGAGAGAGCTTTTTTGGCATTGCTCAATCATTGGAGGGCTTGACAACTTGCAAGGCTATAAGGGACAATAACCATGGTGTGTCACCTTGGAATCTTGATGATAAAGTAAGGTTGCTTATCCCATTGAGATGTGCCTGCCCATTTTCATCTCATGTTAGACCACAACCGAGGCTTCTTCTTTCTTATCCTGTAAGTGAAGGTGACACAATTTCTAATTTGGCCTCAAAGTTCAATATTACCAAAGAAGCTATTGTTTCTGTGAATAACATATCATCAGAAGGCCTTAGACTTGGAAGCCTTGTACCCTTTACATCTATTTTAATTCCACTTAATGGTAAGCCTATTATTGGTCCTTTGGTTAAACCCAAGGAACCCAATTCTGGTTTTCCAACACCAACCAGCATCCCAGTGATTAGTCCCCACAAGAAGTCAACAATGTGGAAGACTCAATTGTATATTGGCCTTGCTGGGGTTGCACTTGGAGTCTGCATTGCTTTTGCTGTAGCCTTTTACTTTATCAGATTGAAGCACAAGAAGGAGGAAGAGAATTCATGCAAAGGAGATATGGAGCAGCAATATCTGAATCAGAGTGTGAGAACCACCTCCACCAGTGACAAGAAAGTTTCCTTTGAGGGATCTCAGGATGCTCTTGATGTGAAAATTGTTGATGTCATACCACGTAAGATGTTGCTGGAGACTTACACCATAGAAGACATGAGAAAAGCAACTGAGAATTTCAGTTTAAGCAATCACATTGAAGGATCAGTGTTCCATGGTCGTCTAAATGGGAAAAACATGGCAATCAAAAGAACAAAGGCAGGAACTGTGTCAAAAGTAGATCTTGGCCTTTTCCATGATGCACTTCACCACCATCCCAACATACTTAGGCTTCTTGGAACAAGCATGTTAGAAGAGGGGCAACAGCAAGAGCAAGAGAAAGAGTCTTTTATGGTTTTTGAGTATGCCAAAAATGGTTCATTGAAAGATTGGCTTCATGGAGGGCTGGCCATAAAGAACCAGTTCATTGCTTCCTGCTATTGCTTCCTCACTTGGAGCCAAAGGCTCAGAATCTGCCTTGATGTAGCCAGTGCCTTGCAGTATATGCACCATGTTATGAACCCAAGCTATGTGCATAGAAATGTTAAGAGCAGGAACATCTTTTTAGATGAAGAATTTGGTGCCAAGATAGGGAATTTTGGGATGGCAGGTTGTGTTGAGAATGACACTGAGGACCCACATTTCTATTCCACCAACCCTGCCTCTTGGAGTTTGGGTTATTTGGCTCCTGAATATGTGCACCAAGGTATAATTTCCCCAAGCATTGACATCTTTGCTTATGGGGTGGTCTTGTTGGAAGTTTTGTCAGGTCAAACACCCATAAGCAGGCCTAATGATAAGGGCGAAGGAAGTACTTGGCTCACAGATAAAATCAAATCCATTTTGGTGTCAGAAAATGGTAATCAACTAAGGGAGTGGATAGACAGTGCATTAGGGGAGAACTACTCATTTGATGCAGCTGTGACACTGGCCAACATTGCAAGAGCTTGTGTTGAGGAAGATTCTTCTTTGAGACCAAGTGCAAGGGAAATTGTTGAGAAGCTATCAAGATTGGTGGAGGAATTACCAGAAGGGGAAGGGGAAGGGGAACAACACATGTTAATGAGTGAAAGCTCTAGCAAACCTCTGGTGAAAGCACTGGAAAACAATCTGTGA 2088 0.4262 MGTVEMIIAFHMKALVFFLWLFVPSLGKDLLSCETTSPDASGYHCIENGSQSQCATFALFLTNSYYSSLSNLSSYLGLNRLLIAQANGFSAGTEFLSQDHPLLIPIECKCKGGFFQAELTKTTIKGESFFGIAQSLEGLTTCKAIRDNNHGVSPWNLDDKVRLLIPLRCACPFSSHVRPQPRLLLSYPVSEGDTISNLASKFNITKEAIVSVNNISSEGLRLGSLVPFTSILIPLNGKPIIGPLVKPKEPNSGFPTPTSIPVISPHKKSTMWKTQLYIGLAGVALGVCIAFAVAFYFIRLKHKKEEENSCKGDMEQQYLNQSVRTTSTSDKKVSFEGSQDALDVKIVDVIPRKMLLETYTIEDMRKATENFSLSNHIEGSVFHGRLNGKNMAIKRTKAGTVSKVDLGLFHDALHHHPNILRLLGTSMLEEGQQQEQEKESFMVFEYAKNGSLKDWLHGGLAIKNQFIASCYCFLTWSQRLRICLDVASALQYMHHVMNPSYVHRNVKSRNIFLDEEFGAKIGNFGMAGCVENDTEDPHFYSTNPASWSLGYLAPEYVHQGIISPSIDIFAYGVVLLEVLSGQTPISRPNDKGEGSTWLTDKIKSILVSENGNQLREWIDSALGENYSFDAAVTLANIARACVEEDSSLRPSAREIVEKLSRLVEELPEGEGEGEQHMLMSESSSKPLVKALENNL* 696
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g1648 695 SUPERFAMILY LysM domain 186 225 IPR036779 -
Apr4g1648 695 CDD LysM 186 223 IPR018392 -
Apr4g1648 695 Coils Coil 688 695 - -
Apr4g1648 695 PANTHER PROTEIN LYK2 7 691 - -
Apr4g1648 695 PANTHER LYSM-DOMAIN RECEPTOR-LIKE KINASE-RELATED 7 691 - -
Apr4g1648 695 Gene3D Transferase(Phosphotransferase) domain 1 447 681 - -
Apr4g1648 695 Pfam LysM domain 187 223 IPR018392 -
Apr4g1648 695 ProSiteProfiles LysM domain profile. 185 233 IPR018392 -
Apr4g1648 695 Gene3D Phosphorylase Kinase; domain 1 348 446 - -
Apr4g1648 695 Gene3D LysM domain 185 234 IPR036779 -
Apr4g1648 695 Pfam Protein kinase domain 379 657 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr4g1648 695 ProSiteProfiles Protein kinase domain profile. 367 662 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr4g1648 695 SMART LysM_2 186 234 IPR018392 -
Apr4g1648 695 SUPERFAMILY Protein kinase-like (PK-like) 352 659 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g1648 Apr-Chr4 19298280 19300367 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g1648 42 689 LysM Receptor-like Kinase (LYKs) Gene Family AT3G01840 40.896 6.14e-149 446
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LysM Apr4g1648 Pkinase 4.2e-30 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g1648 - - aprc:113862295 1366.29
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr4g1648 4 19298280 19300367 Apr4g1648 4 19298280 19300367 ECH