Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g1643 ATGCCGGAAGAAACGACGTCGATCGATTACGTGATGGAGGCAGCGTCTGGGCCCCACTTCTCTGGCCTCAGACTCGACGCATCTCCCACACACGATTCAACCCTAACCCCCGATTACCTTCCCAATCAACCCTTCGTCATAGGAGTTTCGGGAGGTACTGCTTCGGGGAAGACCACCGTTTGCGACATGATCATTCAGCAGCTTCACGATCACCGCGTCGTCCTCGTCAATCAGGACTCGTTCTATCGCGGGTTGAGACCTGAGGAGTTGGAACACGTTCACGAGTACAATTTCGACCACCCTGATGCTTTTGACACTGAGCAACTGTTAGAGTGCATGAGGACACTCATCAGCGGCCAGAGCGTTCAAGTCCCTATTTACGATTTCAAGAAGCACCAACGCTCTTCCGATAGCTTTCGCCAAGTCAATGCCTCTGATGTGATTATATTGGAGGGAATTCTTGTATTCCACGATCAGGGTGTCCGCGATCTGATGAACATGAAGATATTTGTTGACACAGATGCTGATGTGAGACTTGCTCGTAGAATTAGACGTGACACAGTGGAGAGGGGCAGGGATATAAACTCTGTACTTGAACAGTATGCAAAGTTTGTTAAGCCTGCATTTGATGATTTTGTTCTACCATCAAAAAAGTATGCTGATGTGATAATTCCTCGTGGAGGTGATAATCATGTTGCCATTGATTTGATTGTGCAACATATCCGCACGAAGCTTGGCCAACATGATCTATGTAAAATATACCCAAACGTTTATGTTATTCAGTCTACATTCCAGATAAGGGGGATGCACACTTTGATTCGAGACCGAGACATATCAAAGCATGATTTTGTATTTTATTCAGATCGACTTATACGACTGGTTGTTGAGCATGGTCTAGGTCATCTGCCTTTCACTGAAAAGCAAGTGGTTACTCCAACAGGATCAGTCTATACTGGTGTTGATTTCTGCAAGAAGTTGTGTGGTGTTTCAATTGTTCGAAGTGGTGAGAGCATGGAAAATGCACTTCGTGCATGTTGTAAGGGAATTAAAATTGGAAAAATTCTGATTCACCGGGATGGAGACAATGGAAAACAGGTAAATATATCATTTGGAACTGATGAACTTGACTTAGAGCAGCCCTCATGTGTAGTTTCTCTACGGATGTGGTTTGTGTTTAATGGTAAAACCCTTTGCATCTCTGGGCAGCTTATATACGAGAAGCTCCCCAAGGATATTTCAGAACGGCATGTCTTGCTTCTTGATCCTGTCCTTGCCACAGGTAACTCTGCTAACCAGGCAATTGAATTACTCATTCAGAAAGGAGTACCCGAAAATCACATTATATTCCTGAATCTCATTTCTGCTCCTGAGGGAATCCATTGTGTGTGTAAAAGGTTTCCATCTTTGAAAATTGTCACGTCTGAGATTGATGTTGCATTAAATGAGGAGTTTCGTGTTATCCCGGGATTGGGTGAGTTTGGTGATCGCTATTTTGGTACCGATGATTGA 1509 0.4414 MPEETTSIDYVMEAASGPHFSGLRLDASPTHDSTLTPDYLPNQPFVIGVSGGTASGKTTVCDMIIQQLHDHRVVLVNQDSFYRGLRPEELEHVHEYNFDHPDAFDTEQLLECMRTLISGQSVQVPIYDFKKHQRSSDSFRQVNASDVIILEGILVFHDQGVRDLMNMKIFVDTDADVRLARRIRRDTVERGRDINSVLEQYAKFVKPAFDDFVLPSKKYADVIIPRGGDNHVAIDLIVQHIRTKLGQHDLCKIYPNVYVIQSTFQIRGMHTLIRDRDISKHDFVFYSDRLIRLVVEHGLGHLPFTEKQVVTPTGSVYTGVDFCKKLCGVSIVRSGESMENALRACCKGIKIGKILIHRDGDNGKQVNISFGTDELDLEQPSCVVSLRMWFVFNGKTLCISGQLIYEKLPKDISERHVLLLDPVLATGNSANQAIELLIQKGVPENHIIFLNLISAPEGIHCVCKRFPSLKIVTSEIDVALNEEFRVIPGLGEFGDRYFGTDD* 503
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g1643 502 PANTHER URIDINE KINASE 33 364 - -
Apr4g1643 502 PANTHER URIDINE KINASE 402 499 - -
Apr4g1643 502 PRINTS Uridine kinase signature 44 61 - -
Apr4g1643 502 PRINTS Uridine kinase signature 74 85 - -
Apr4g1643 502 PRINTS Uridine kinase signature 119 134 - -
Apr4g1643 502 PRINTS Uridine kinase signature 176 186 - -
Apr4g1643 502 PRINTS Uridine kinase signature 190 201 - -
Apr4g1643 502 PRINTS Uridine kinase signature 212 225 - -
Apr4g1643 502 SUPERFAMILY PRTase-like 258 499 IPR029057 -
Apr4g1643 502 PANTHER URIDINE KINASE-LIKE PROTEIN 2, CHLOROPLASTIC 33 364 IPR029930 GO:0004849|GO:0044206
Apr4g1643 502 PANTHER URIDINE KINASE-LIKE PROTEIN 2, CHLOROPLASTIC 402 499 IPR029930 GO:0004849|GO:0044206
Apr4g1643 502 Gene3D - 248 500 IPR029057 -
Apr4g1643 502 Pfam Phosphoribulokinase / Uridine kinase family 46 232 IPR006083 GO:0005524|GO:0016301
Apr4g1643 502 ProSiteProfiles UvrC family, homology region profile. 150 233 IPR001162 GO:0009381
Apr4g1643 502 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 40 237 IPR027417 -
Apr4g1643 502 TIGRFAM udk: uridine kinase 44 244 IPR000764 -
Apr4g1643 502 CDD PRTases_typeI 321 473 IPR000836 -
Apr4g1643 502 Gene3D - 41 247 IPR027417 -
Apr4g1643 502 CDD UMPK 46 244 IPR000764 -
Apr4g1643 502 Pfam Uracil phosphoribosyltransferase 262 500 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g1643 Apr-Chr4 19146909 19152276 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g1643 1 502 PRT Gene Family AT5G40870 79.271 0.0 816
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g1643 K00876 - gmx:100786137 867.455