Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g1637 ATGGGAGAGGATTCTCGGGAGTTCGGAGAAAGCACAATAATCAACCAAAAAATGGAAGAAGTTGAAAGAGAAGAAGAACTAGACCCAGAAAGCAATTCACTGAATCAGTCACTACTCAAGAGGAACCGCACACTGTCTTCAAATCCACTTGCTCTAGTTGGAGAAAAAGTTTCCTACATAGAAAGCTTGGATTATGAGATAAATGAGAATGATCTATTCAAGCATGATTGGAGGAGCAGATCAAGAGCTCAAGTGTTGCAATACATATTCTTGAAATGGTCACTAGCATTCCTTGTTGGACTTCTCACTGGTATTATAGCCACTCTCATCAATCTTGCTGTTGAGAACATTGCAGGGTACAAATTTCTTCTTGTTCTTAAATTCATCCGCAAGGTCAGGTACTGGACGGGTTTCCTATATTTCACGGGCATTAATTTCATTTTGACATTTGTTGCTGCTGTTTTGTGTGTGTGTTTTGCACCCACAGCAGCTGGACCTGGAATTCCTGAAATAAAAGCTTATCTTAATGGTGTTGATACTCCCAACATGTTCGGTGCTACAACATTGATTGTCAAGATAGTTGGAAGCATTGGAGCTGTCTCTGCAGGCCTAGATTTGGGAAAAGAAGGACCGTTGGTACACATAGGAAGCTGCATTGCTTCCTTACTAGGCCAAGGAGGCCCTGACAACTACAGGATCAAATGGCGCTGGCTTAGATATTTTAACAATGATCGTGACCGTCGAGATCTTATTACCTGTGGTGCATCTTCAGGAGTTTGTGCAGCTTTTCGGGCTCCTGTGGGTGGAGTTCTTTTTGCTCTTGAAGAGGTGGCAACCTGGTGGAGAAGTGCTCTTCTATGGAGAACTTTTTTCAGCACAGCTGTGGTGGTAATGGTGCTCAGAGCCTTCATTGAAATCTGCAATTCTGGGAAATGTGGGCTTTTTGGTAAAGGAGGGCTGATCATGTTTGATGTGAGCAATGTCACTGTGAGGCACCATGTTATGGATATAGTCCTTGTCGTAGTCATTGGAATCATAGGCGGGGTACTGGGAAGCCTTTACAATCATGTTCTATACAAGGTCCTCAGACTCTACAATCTCATCAATCAGAAAGGAAAAATACATAAACTCCTCCTCAGTCTTGCAGTTGCACTTTTCACATCAGTGTGTCAATATGGTCTCCCATTCTTAGCAAAATGCACCCCATGTAATTCATCGCTTCCAGAGTCTGTCTGCCCTACCAATGGACGGTCTGGAAATTTTAAACAATTCAACTGCCCACCTGGCTTCTACAATGATCTTGCTACTCTGCTTCTTACCACTAATGATGATGCTGTCCGAAACATATTCTCAACCAACACCCCTCATGAATATCAACCCTTGTCCCTCCTAATTTTCTTTGTACTCTATTGCGTATTAGGACTAATTACTTTTGGAATTGCAGTGCCATCAGGGCTCTTCCTCCCAATCATCCTTATGGGCTCAGCTTATGGCCGCCTCCTTGGCATCTACATGGGACCTAATACAAACATTGACCAAGGGTTGTTTGCAGTACTTGGTGCAGCCTCCCTCATGGCTGGTTCCATGAGGATGACTGTTTCCCTTTGTGTGATCTTCCTTGAACTCACCAACAATCTACTCCTACTACCAATAACAATGATTGTTCTCCTAATAGCCAAAACTGTTGGAGATACTTTCAACCCAAGCATCTATGAGATGATACTGCACTTGAAAGGCCTTCCTTTCATGGATGCAAATCCTGAGCCATGGATGAGAAATCTCACTGTAGGTGAGCTTGTTGATGTAAAGCCAGCAGTGTTTACCCTCCATGGAGTAGAAAAGGTAGCCAACATAGTAAATGTCTTGAAAAATACTACACATAATGGTTTCCCAGTTATGGATGATGGGGTGGTACCACCGGTAGGACAGATCAGTGTAGCAACAGAACTGCATGGACTGATTCTAAGAGCACATCTCATCCAGGCACTAAAGAAGAAGTGGTTCTTGAAAGAGAGAAAGAGAACAGAGGACTGGAAAGTGAGAGAGAAATTTACCTGGATAGAGCTAGCTGAGAGAGAAGGAAGTATTGAAGAGGTGGCTGTGACTAGTGAGGAAATGGAGATGTTTGTTGATCTACATCCTCTTACCAATACAACTCCCTTTACAGTGCTAGAGAGCATGTCAGTAGCAAAAGCAATGATCCTCTTCAGGCAAGTTGGACTTCGCCATCTGCTTGTAGTACCCAAGTATCAAGCTTCCGGGGTATCCCCTGTAATTGGGATCTTGACCAGGCAGGATCTACTTGCCCACAACATTCTGACAGTTTTTCCTCACCTGGCAAAATCAAAGGGCAGAGAAAAGAGGAACTGA 2370 0.435 MGEDSREFGESTIINQKMEEVEREEELDPESNSLNQSLLKRNRTLSSNPLALVGEKVSYIESLDYEINENDLFKHDWRSRSRAQVLQYIFLKWSLAFLVGLLTGIIATLINLAVENIAGYKFLLVLKFIRKVRYWTGFLYFTGINFILTFVAAVLCVCFAPTAAGPGIPEIKAYLNGVDTPNMFGATTLIVKIVGSIGAVSAGLDLGKEGPLVHIGSCIASLLGQGGPDNYRIKWRWLRYFNNDRDRRDLITCGASSGVCAAFRAPVGGVLFALEEVATWWRSALLWRTFFSTAVVVMVLRAFIEICNSGKCGLFGKGGLIMFDVSNVTVRHHVMDIVLVVVIGIIGGVLGSLYNHVLYKVLRLYNLINQKGKIHKLLLSLAVALFTSVCQYGLPFLAKCTPCNSSLPESVCPTNGRSGNFKQFNCPPGFYNDLATLLLTTNDDAVRNIFSTNTPHEYQPLSLLIFFVLYCVLGLITFGIAVPSGLFLPIILMGSAYGRLLGIYMGPNTNIDQGLFAVLGAASLMAGSMRMTVSLCVIFLELTNNLLLLPITMIVLLIAKTVGDTFNPSIYEMILHLKGLPFMDANPEPWMRNLTVGELVDVKPAVFTLHGVEKVANIVNVLKNTTHNGFPVMDDGVVPPVGQISVATELHGLILRAHLIQALKKKWFLKERKRTEDWKVREKFTWIELAEREGSIEEVAVTSEEMEMFVDLHPLTNTTPFTVLESMSVAKAMILFRQVGLRHLLVVPKYQASGVSPVIGILTRQDLLAHNILTVFPHLAKSKGREKRN* 790
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g1637 789 PRINTS Chloride channel signature 161 178 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Apr4g1637 789 PRINTS Chloride channel signature 192 211 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Apr4g1637 789 PRINTS Chloride channel signature 256 275 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Apr4g1637 789 PRINTS Chloride channel signature 482 502 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Apr4g1637 789 PRINTS Chloride channel signature 514 530 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Apr4g1637 789 PRINTS Chloride channel signature 532 551 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Apr4g1637 789 PRINTS Chloride channel signature 570 584 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Apr4g1637 789 SUPERFAMILY CBS-domain pair 587 769 IPR046342 -
Apr4g1637 789 Pfam CBS domain 718 768 IPR000644 -
Apr4g1637 789 Gene3D Clc chloride channel 84 585 - -
Apr4g1637 789 Gene3D - 602 770 IPR046342 -
Apr4g1637 789 CDD ClC_6_like 61 583 - -
Apr4g1637 789 ProSiteProfiles CBS domain profile. 716 782 IPR000644 -
Apr4g1637 789 MobiDBLite consensus disorder prediction 1 33 - -
Apr4g1637 789 SMART cbs_1 605 664 IPR000644 -
Apr4g1637 789 SMART cbs_1 719 772 IPR000644 -
Apr4g1637 789 PANTHER CHLORIDE CHANNEL PROTEIN 9 784 - -
Apr4g1637 789 PRINTS Plant CLC chloride channel signature 66 74 IPR002251 GO:0005247|GO:0006821|GO:0016020
Apr4g1637 789 PRINTS Plant CLC chloride channel signature 277 285 IPR002251 GO:0005247|GO:0006821|GO:0016020
Apr4g1637 789 PRINTS Plant CLC chloride channel signature 291 301 IPR002251 GO:0005247|GO:0006821|GO:0016020
Apr4g1637 789 PRINTS Plant CLC chloride channel signature 309 316 IPR002251 GO:0005247|GO:0006821|GO:0016020
Apr4g1637 789 PRINTS Plant CLC chloride channel signature 434 450 IPR002251 GO:0005247|GO:0006821|GO:0016020
Apr4g1637 789 SUPERFAMILY Clc chloride channel 70 585 IPR014743 -
Apr4g1637 789 CDD CBS_pair_voltage-gated_CLC_euk_bac 603 770 - -
Apr4g1637 789 PANTHER CHLORIDE CHANNEL PROTEIN CLC FAMILY MEMBER 9 784 - -
Apr4g1637 789 Pfam Voltage gated chloride channel 149 563 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g1637 Apr-Chr4 19032053 19036787 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g1637 28 784 Ion Channels AT3G27170 80.449 0.0 1246
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g1637 K05016 - gmx:100788620 1413.67
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr4g1637 4 19032053 19036787 Apr4g1637 4 19032053 19036787 ECH
Apr4g1637 4 19032053 19036787 Apr6g0468 6 5525146 5530286 PCT