Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g1617 ATGGAAGTGGAGCAGAATCAGAATCTGCAATTAGGGTTTCCCTTCTGGAAACCGATTCGTCGCAGGTTCGGACCTGATTCTCCTTTCTTCGCTACCGGCAACCTCGAACGAGAACTTCTCGCCAAACAGGTTGCCTTGCAATTAACAGAAGAGAAGCAACAGCTTGAGAATTGGATACAAGAAGAAGGAAGGGAAGTTTTTTGTCCCATTGTTGGTTGTGGTGCACGCTTGACATCAATGGAGGACTTTGAAAATCACTATAATGCAAGGCATACTGCATCCTGTTCTGTGTGTTCCAGGGTCTACCCAACAACACGTCTTCTGAGCATACATGTATCTGAAGTACACGATTCTTTCTTTCAGGCAAAAGTTGCACGTGGCTATGATGTGTATGAATGCTTAGTGGAAGGGTGTGGTTTGAAATTCAAAAGCTACAATAGCAGGCAGCAGCATCTGGTTGACAAGCATAAATTCCCCATTTCATTTGAGTTTTTCAAGAAGTCTCGACCTTCAAAGAAACAGAGGTCGAAGTCCCAACGCAAACAAACTGTTCGTAAAGAAGATGCTTCCGGCATGATGGAAGTGGAAAATGCAGCCATGGACGACCTTGTTTTAGCTGTCTCTAAATTGAGCACTTCTGACTCCATTCCTTCATCCATCAGCTTTGGCCGCCGGCACAAAGGGTTGTCGTTTGTCCCCCGAGCTGTTCAGCGTGGTAATGGATCAAACTCATCAGCGTCCATGACAAAGAGATAG 756 0.4537 MEVEQNQNLQLGFPFWKPIRRRFGPDSPFFATGNLERELLAKQVALQLTEEKQQLENWIQEEGREVFCPIVGCGARLTSMEDFENHYNARHTASCSVCSRVYPTTRLLSIHVSEVHDSFFQAKVARGYDVYECLVEGCGLKFKSYNSRQQHLVDKHKFPISFEFFKKSRPSKKQRSKSQRKQTVRKEDASGMMEVENAAMDDLVLAVSKLSTSDSIPSSISFGRRHKGLSFVPRAVQRGNGSNSSASMTKR* 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g1617 251 ProSitePatterns Zinc finger C2H2 type domain signature. 68 91 IPR013087 -
Apr4g1617 251 PANTHER UNCHARACTERIZED 10 238 IPR039258 -
Apr4g1617 251 PANTHER ZINC FINGER PROTEIN 511 10 238 - -
Apr4g1617 251 SMART c2h2final6 93 116 IPR013087 -
Apr4g1617 251 SMART c2h2final6 131 156 IPR013087 -
Apr4g1617 251 SMART c2h2final6 66 91 IPR013087 -
Apr4g1617 251 Coils Coil 41 61 - -
Apr4g1617 251 MobiDBLite consensus disorder prediction 169 192 - -
Apr4g1617 251 ProSitePatterns Zinc finger C2H2 type domain signature. 133 156 IPR013087 -
Apr4g1617 251 MobiDBLite consensus disorder prediction 236 251 - -
Apr4g1617 251 MobiDBLite consensus disorder prediction 231 251 - -
Apr4g1617 251 ProSitePatterns Zinc finger C2H2 type domain signature. 95 116 IPR013087 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g1617 10 247 C2H2 Transcription Factor Family AT5G14140 63.306 3.08e-114 327
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Apr4g1617 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g1617 - - gmx:100819557 419.468
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr4g1617 4 18542366 18544602 Apr4g1617 4 18542366 18544602 ECH