Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g1605 ATGGATTGGGACTGGAAAGAGTTTGCTTGGGATCCATGTGGGTTAGAGCTAGCTAACGGTGCCTTGGATGGTCAGAAGAATGAAGCAACTTCAGTGGATTTGAGGCTTGGTGAGATTTCTGAGGAAAAATCAGCACCGGATACTCCGAAGGACCCAAAAGACTCAAAAACTGTGTCATCTCCATCTGGGTCATCAAAAAGATCACGCCTTCAAAATGGATCACAGAACATGTGTTGTTCTGTTGATGGATGCAATTCTGACCTCAGGGATTGCAGAGAGTATCATAGGCGCCATAGGGTGTGTGAAAAGCACTCCAAAACCCCCGTTGTGTTGGTAGGGGGGAAGCAACAGCGGTTCTGCCAGCAATGCAGCAGGTTCCATTCACTTGGGGAGTTTGATGAGGTTAAGAGGAGTTGCAGGAAACGTCTTGATGGGCATAATAGGCGTAGGAGGAAACCTCAGCCACCCTCTCTTTTCATGGCTGCTGAGAAATTCATGTACAATTACAAAGGACCCAGAATCCTGCAATTTGGTAGCCCTCAAACATATGCGAACCCTATTATGAGAAATATGTGGCCTGCCACAGCCAAAACTGGAGCTGAATCGGATTATGATCCTCCTCGGCTATTATACAGAATCGACAAGCATAGGCAGGACAAGGGACATCCTCTTTGGCTAGAAAATGACCCTAAAGTAGTGAATGGCAATGAAGCAATGCATGGAACTCCAATCTGTCCGCCTATTCGTGGCGCCATTGCCCCATCAGCAGGTGGAAAGAGCAGCCGGAAGCTCTCTTCTGATGGAAAACCTGGATCTTTTGACTCAGGTTGTGCTCTCTATCTTCTGTCAACACTTCAATCACAAAGTCCAGAGTTGAGTATGGTGCAATCCAGCATCACCTGTCCAACACAATCTCCACCAGTGGCTGCGCAGAATCAGTATGCCTGCTTAGAAAGGCCAAAAGATAAGCCTAGTGGTCAAGTATTGGTCCTTGATGCAAACACAACCACCCTTCATCGCAGTGGAATGCTTCAAATGGGGCCTGATGGATTGGTTGAAAATGAGGACTCACTAACATTTCCCTCTTTCTGGGAGTAG 1098 0.4718 MDWDWKEFAWDPCGLELANGALDGQKNEATSVDLRLGEISEEKSAPDTPKDPKDSKTVSSPSGSSKRSRLQNGSQNMCCSVDGCNSDLRDCREYHRRHRVCEKHSKTPVVLVGGKQQRFCQQCSRFHSLGEFDEVKRSCRKRLDGHNRRRRKPQPPSLFMAAEKFMYNYKGPRILQFGSPQTYANPIMRNMWPATAKTGAESDYDPPRLLYRIDKHRQDKGHPLWLENDPKVVNGNEAMHGTPICPPIRGAIAPSAGGKSSRKLSSDGKPGSFDSGCALYLLSTLQSQSPELSMVQSSITCPTQSPPVAAQNQYACLERPKDKPSGQVLVLDANTTTLHRSGMLQMGPDGLVENEDSLTFPSFWE* 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g1605 365 MobiDBLite consensus disorder prediction 19 74 - -
Apr4g1605 365 MobiDBLite consensus disorder prediction 35 54 - -
Apr4g1605 365 MobiDBLite consensus disorder prediction 55 74 - -
Apr4g1605 365 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 16 365 IPR044817 GO:0003677
Apr4g1605 365 SUPERFAMILY SBT domain 77 158 IPR036893 GO:0003677|GO:0005634
Apr4g1605 365 Pfam SBP domain 79 152 IPR004333 GO:0003677
Apr4g1605 365 ProSiteProfiles Zinc finger SBP-type profile. 76 153 IPR004333 GO:0003677
Apr4g1605 365 Gene3D - 70 140 IPR036893 GO:0003677|GO:0005634
Apr4g1605 365 PANTHER TRANSCRIPTION FACTOR SBP FAMILY-RELATED 16 365 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g1605 Apr-Chr4 18316430 18319799 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g1605 79 177 SBP-box Gene Family AT5G50670 65.657 4.90e-42 148
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Apr4g1605 SBP 4.1e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g1605 - - gmx:100798317 615.535
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr4g1605 4 18316430 18319799 Apr4g1605 4 18316430 18319799 ECH