Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g1577 ATGGAGAAGCTCATATCCTATGGTATAGATGGGAACATCAAGTTACCAGTTGGGTACAGGTTTCACCCCACTGATGATGTTCTTGTCAGCTACTACTTGACCAAGAAGGTTTTTGCTCAACCATTTCCCTCTCAGCTCATCCCAGACTATGATGTCTTCCAAACTCAGCCTTCGGAGCTACCAGGAGGTGGAAAGAGTTTCTATGAGCAGAAGTTTTTCTTCTACCATACTGGGACCCGAGTGTTTGAGAACCCTGACAAGAGGGTTGTTGGGAGTGGCCAATGGAGAGTGGTGGAGAAAGGCATGGATGTTGAGCTCGCAGGGAACAACGAGTTTATTGGGAAGAAAAACACACTTGTTTTCTGGGAAGGGAAAGGAACCCGTTTTAGCAAAACAAATTGGGTGATGCATGAGTTCCAGCTTGCCCCTACATCAAATCCATCTGAGATGTCAGTTTGGGGTGTTTACCGCATATTCCAGAAGAAGGAGGCAAAAAGGGGGAAGAAGGCGAAAGGGTCAAGGGGAGAAGCCTCTAATAGCAGAAATGTTGAGATGGTTGATGAGAGCGTTGTGAACGTGACACCAAGTGTCATTGATTTCACTATGGAGACTGGCAGTTTCTCTGGACCTCCCTCTCCTTTGTCCCCATGA 651 0.4685 MEKLISYGIDGNIKLPVGYRFHPTDDVLVSYYLTKKVFAQPFPSQLIPDYDVFQTQPSELPGGGKSFYEQKFFFYHTGTRVFENPDKRVVGSGQWRVVEKGMDVELAGNNEFIGKKNTLVFWEGKGTRFSKTNWVMHEFQLAPTSNPSEMSVWGVYRIFQKKEAKRGKKAKGSRGEASNSRNVEMVDESVVNVTPSVIDFTMETGSFSGPPSPLSP* 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g1577 216 Pfam No apical meristem (NAM) protein 16 141 IPR003441 GO:0003677|GO:0006355
Apr4g1577 216 SUPERFAMILY NAC domain 12 161 IPR036093 GO:0003677|GO:0006355
Apr4g1577 216 Gene3D NAC domain 24 166 IPR036093 GO:0003677|GO:0006355
Apr4g1577 216 ProSiteProfiles NAC domain profile. 15 161 IPR003441 GO:0003677|GO:0006355
Apr4g1577 216 PANTHER NAC TRANSCRIPTION FACTOR-LIKE PROTEIN 15 168 - -
Apr4g1577 216 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 15 168 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g1577 Apr-Chr4 17406467 17407863 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g1577 3 164 NAC Transcription Factor Family AT5G13180 37.209 1.17e-31 114
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Apr4g1577 NAM 5.9e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g1577 - - gmx:100807171 206.068
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr4g1577 4 17406467 17407863 Apr1g0326 1 3924418 3925850 ECH
Apr4g1577 4 17406467 17407863 Apr2g1144 2 17699982 17701408 ECH
Apr4g1577 4 17406467 17407863 Apr4g1577 4 17406467 17407863 ECH
Apr4g2807 4 36595722 36624920 Apr4g1577 4 17406467 17407863 ECH